pycom11g06320

S1/P1 Nuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
4846773 .. 4847956
1184 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGCATGTCGCGCTCAGGACAGATGAGGGAGGAAACACGATAGCCTTGCGTTGGTACAGAAACAAATCCAATCTTCACCATGTGTGGGATAGGGAGATCATACAACAAACTATGAAGGACTATTATGACAGAACACACGGGAAAGACTTCGGCAAACAGTTTTGCTGTTGGAGCATAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.42

Weight (kDa)

8.71

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1-P1_nuclease PF02265 1 - 47 1.2e-12 S1/P1 Nuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 51, 85
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
Bpu10I CCTNAGC 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 85
BseLI CCNNNNNNNGG 2 cut(s) 51, 85
BseMII CTCAG 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 51, 85
Bsp143I GATC 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 1 cut(s) 11
BssMI GATC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 10, 171
BstNSI RCATGY 1 cut(s) 8
BstUI CGCG 1 cut(s) 11
CfoI GCGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 55
CviAII CATG 2 cut(s) 5, 80
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DraIII CACNNNGTG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 83
FaiI YATR 6 cut(s) 6, 81, 101, 113, 126, 176
FatI CATG 2 cut(s) 4, 79
GlaI GCGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 8, 83
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HphI GGTGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 171
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 2 cut(s) 8, 83
HspAI GCGC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 171
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 65
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 2 cut(s) 19, 23
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 146
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 10, 171
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 8, 83
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 96
SgeI CNNG 8 cut(s) 17, 22, 28, 49, 58, 92, 149, 151
Sse9I AATT 1 cut(s) 181
TaaI ACNGT 1 cut(s) 159
TasI AATT 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 128
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.