Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4865635 .. 4867164

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCATTGCTGATTACTTACGATGAGCACGGCGGGTTTTACGACCACGTGCCGACGCCGGTTTCAGACGTGCCGAGCCCGGATGGGATGGAGGGGAACGAACCGTATTATTTCCGGTTTGACCGGTTGGGTGTGCGGGTGCCGACCATACTCGTCTCGCCATGGGTCGAAAAGGGTGCCGTGATCCATGAGCCAACAGGGCCGACGCCACATTCCCAATTTGAGCATTCTTCTATCCCTGCCACTGTAAAGAAGCTGTTCAATTTGAAGTCGAACTTCCTCACAAAGAGAGATGCATGGGCTGGTACTTTCGAGAATTATTTTACCCTCCGCAGTACTCCTCGTCATGACTGTCCAGAAACTCTTCCAGAGGTGACAAAGTCACTGAGGCCAGGCGGACCCAGAGAAGATTCGAGCCTCTCAGAATTCCAAGTCGAGCTGATCCAGCTTGCATCCCAGCTCAATGGCGATCATGTCCTCAAAACCTACCCTGATATCGGCAAAACCATGACAGTGCGTGAAGCCAACAGTTACGCAGAGGATGCAGTCGAGAGGTTCCTGGAAGCCGGAAGAGCTGCTCTAAAAGCCGGAGCGAACGAGTCTGCAATTGTTACAATGAGACCTGCCCTCACCAGCCGAGTTAACGCACAAGGTCATAGCTCCTACCTAGAATCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009405 GO:0009987 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0034480 GO:0035821 GO:0042578 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0046434 GO:0051701 GO:0051704 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

227

Amino Acids

25.06

Weight (kDa)

5.62

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	1 - 90	2.3e-28	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	2 cut(s)	139, 176
AciI	CCGC	4 cut(s)	33, 136, 331, 396
AclWI	GGATC	2 cut(s)	178, 436
AcsI	RAATTY	1 cut(s)	425
AcvI	CACGTG	1 cut(s)	49
AcyI	GRCGYC	2 cut(s)	56, 206
AfaI	GTAC	2 cut(s)	307, 337
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgeI	ACCGGT	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	262, 268
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	391, 558
AluBI	AGCT	6 cut(s)	256, 439, 448, 460, 575, 660
AluI	AGCT	6 cut(s)	256, 439, 448, 460, 575, 660
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	160, 613
AlwI	GGATC	2 cut(s)	178, 436
AoxI	GGCC	2 cut(s)	200, 389
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	425
AsiGI	ACCGGT	1 cut(s)	123
Asp700I	GAANNNNTTC	2 cut(s)	257, 363
AspS9I	GGNCC	2 cut(s)	200, 398
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	385, 622
AvaII	GGWCC	1 cut(s)	398
BanI	GGYRCC	2 cut(s)	139, 176
BanII	GRGCYC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	2 cut(s)	77, 82
BceAI	ACGGC	2 cut(s)	46, 164
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	393, 560
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	160, 613
BfaI	CTAG	1 cut(s)	668
BfuAI	ACCTGC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	3 cut(s)	80, 393, 560
Bme18I	GGWCC	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	200, 398
BmiI	GGNNCC	4 cut(s)	141, 178, 400, 557
BmrFI	CCNGG	3 cut(s)	80, 393, 560
BmsI	GCATC	3 cut(s)	283, 461, 532
BpuMI	CCSGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	49
BsaHI	GRCGYC	2 cut(s)	56, 206
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	2 cut(s)	114, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	2 cut(s)	58, 123
Bse3DI	GCAATG	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	393, 560
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	4 cut(s)	88, 93, 452, 547
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	2 cut(s)	377, 435
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	456
BshFI	GGCC	2 cut(s)	202, 391
BshNI	GGYRCC	2 cut(s)	139, 176
BshTI	ACCGGT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	6 cut(s)	59, 80, 115, 124, 567, 588
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	160, 613
BsmBI	CGTCTC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	202, 391
Bso31I	GGTCTC	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	30, 80
Bsp143I	GATC	3 cut(s)	183, 441, 469
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	4 cut(s)	33, 136, 331, 396
BspANI	GGCC	2 cut(s)	202, 391
BspCNI	CTCAG	2 cut(s)	378, 434
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	141, 178, 400, 557
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	178, 436
BspQI	GCTCTTC	1 cut(s)	565
BspT107I	GGYRCC	2 cut(s)	139, 176
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	5
BsrFI	RCCGGY	2 cut(s)	58, 123
BssAI	RCCGGY	2 cut(s)	58, 123
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	3 cut(s)	183, 441, 469
BssNI	GRCGYC	2 cut(s)	56, 206
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	393, 560
Bst4CI	ACNGT	5 cut(s)	105, 247, 353, 514, 530
Bst6I	CTCTTC	2 cut(s)	369, 565
BstACI	GRCGYC	2 cut(s)	56, 206
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	386, 421, 675
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	4 cut(s)	88, 93, 452, 547
BstKTI	GATC	3 cut(s)	186, 444, 472
BstMAI	GTCTC	2 cut(s)	160, 613
BstMBI	GATC	3 cut(s)	183, 441, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 445, 542, 572, 584
BstNI	CCWGG	2 cut(s)	393, 560
BstSCI	CCNGG	3 cut(s)	78, 391, 558
BstV1I	GCAGC	1 cut(s)	562
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	202, 391
BtgI	CCRYGG	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	88, 93, 452, 547
BtsIMutI	CAGTG	3 cut(s)	243, 383, 519
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	1 cut(s)	346
Cfr10I	RCCGGY	2 cut(s)	58, 123
Cfr13I	GGNCC	2 cut(s)	200, 398
CseI	GACGC	2 cut(s)	64, 214
Csp6I	GTAC	2 cut(s)	306, 336
CspAI	ACCGGT	1 cut(s)	123
CviAII	CATG	6 cut(s)	162, 188, 297, 347, 473, 508
CviQI	GTAC	2 cut(s)	306, 336
DdeI	CTNAG	3 cut(s)	386, 421, 675
DpnI	GATC	3 cut(s)	185, 443, 471
DpnII	GATC	3 cut(s)	183, 441, 469
Eam1104I	CTCTTC	2 cut(s)	369, 565
EarI	CTCTTC	2 cut(s)	369, 565
EciI	GGCGGA	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	613
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	398
Eco72I	CACGTG	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	391, 558
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	6 cut(s)	165, 191, 300, 350, 476, 511
FaiI	YATR	8 cut(s)	149, 163, 189, 298, 348, 474, 509, 657
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	6 cut(s)	161, 187, 296, 346, 472, 507
FauI	CCCGC	2 cut(s)	26, 129
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	4 cut(s)	95, 100, 439, 554
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	668
GluI	GCNGC	1 cut(s)	576
GsaI	CCCAGC	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	202, 391
HapII	CCGG	6 cut(s)	59, 80, 115, 124, 567, 588
HgaI	GACGC	2 cut(s)	64, 214
Hin1I	GRCGYC	2 cut(s)	56, 206
Hin1II	CATG	6 cut(s)	165, 191, 300, 350, 476, 511
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	410, 599, 671
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	6 cut(s)	59, 80, 115, 124, 567, 588
HphI	GGTGA	2 cut(s)	385, 622
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	2 cut(s)	67, 424
Hpy188III	TCNNGA	5 cut(s)	313, 347, 356, 368, 550
Hpy8I	GTNNAC	1 cut(s)	643
Hpy99I	CGWCG	2 cut(s)	58, 208
HpyCH4III	ACNGT	5 cut(s)	105, 247, 353, 514, 530
HpyCH4IV	ACGT	2 cut(s)	48, 69
HpyCH4V	TGCA	4 cut(s)	296, 452, 545, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 445, 542, 572, 584
HpyF3I	CTNAG	3 cut(s)	386, 421, 675
HpySE526I	ACGT	2 cut(s)	48, 69
Hsp92I	GRCGYC	2 cut(s)	56, 206
Hsp92II	CATG	6 cut(s)	165, 191, 300, 350, 476, 511
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	183, 441, 469
LguI	GCTCTTC	1 cut(s)	565
LmnI	GCTCC	2 cut(s)	590, 665
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	3 cut(s)	283, 461, 532
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	2 cut(s)	48, 69
MaeIII	GTNAC	4 cut(s)	373, 381, 530, 610
MalI	GATC	3 cut(s)	185, 443, 471
MboI	GATC	3 cut(s)	183, 441, 469
MboII	GAAGA	4 cut(s)	222, 356, 419, 582
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	2 cut(s)	30, 80
MluCI	AATT	5 cut(s)	218, 262, 316, 425, 606
MlyI	GAGTC	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	2 cut(s)	257, 363
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	6 cut(s)	59, 80, 115, 124, 567, 588
MspR9I	CCNGG	3 cut(s)	80, 393, 560
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	2 cut(s)	393, 560
MwoI	GCNNNNNNNGC	5 cut(s)	199, 445, 542, 572, 584
NciI	CCSGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	3 cut(s)	183, 441, 469
NlaIII	CATG	6 cut(s)	165, 191, 300, 350, 476, 511
NlaIV	GGNNCC	4 cut(s)	141, 178, 400, 557
NmeAIII	GCCGAG	2 cut(s)	99, 662
NmuCI	GTSAC	2 cut(s)	373, 381
NsiI	ATGCAT	1 cut(s)	298
PagI	TCATGA	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	565
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	257, 363
PfeI	GAWTC	2 cut(s)	410, 671
PflFI	GACNNNGTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	558
PinAI	ACCGGT	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	1 cut(s)	607
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	607
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	2 cut(s)	391, 558
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	2 cut(s)	391, 558
PspN4I	GGNNCC	4 cut(s)	141, 178, 400, 557
PspPI	GGNCC	2 cut(s)	200, 398
PsyI	GACNNNGTC	1 cut(s)	379
RsaI	GTAC	2 cut(s)	307, 337
RsaNI	GTAC	2 cut(s)	306, 336
RseI	CAYNNNNRTG	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	3 cut(s)	183, 441, 469
Sau96I	GGNCC	2 cut(s)	200, 398
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	80, 393, 560
SduI	GDGCHC	2 cut(s)	30, 80
SfaNI	GCATC	3 cut(s)	283, 461, 532
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	218, 262, 316, 425, 606
SsiI	CCGC	4 cut(s)	33, 136, 331, 396
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	3 cut(s)	78, 391, 558
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	5 cut(s)	105, 247, 353, 514, 530
TaiI	ACGT	2 cut(s)	51, 72
TaqI	TCGA	6 cut(s)	168, 272, 312, 413, 435, 549
TasI	AATT	5 cut(s)	218, 262, 316, 425, 606
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	410, 671
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	3 cut(s)	250, 390, 519
TseFI	GTSAC	2 cut(s)	373, 381
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	373, 381
TspRI	CASTG	3 cut(s)	250, 390, 519
Tth111I	GACNNNGTC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	425
XmnI	GAANNNNTTC	2 cut(s)	257, 363
XspI	CTAG	1 cut(s)	668
ZrmI	AGTACT	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.