Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4876836 .. 4878752

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTTCCGGTCGCATAAAAAAATCTCTCTACACAGAGAGATGGCAACTCTAAGCACCCCCCGTATATCTCTGCCACGTCACCCACCAAACCCTCCATCCCCAACCGCCACTAACGACCTCCATTTCTCAAGCGACCCATCTCTTTCCTCAATCGACCACTGCACCAGCATCAAGCAGCTGAAGCAAGTCCACGCCCAAATGCTCCGTACAGGCCTTCTCTTCGACCCCTACTACGCCAGCAAGCTTATCACCGTCTGTGCCCTCTCCTCCTCCGCCAAGGTGAAGCCCAATTCCGTGACATTAACCAACGTGTTATGCGCTTTTAGGCACGCCAGATTGGTGGACGAAGGAAGAACATATTTCTATCAAATGGAGCCAGTTTACGGGGTTGTGCCTGGTCTAAAGCACTATGCTTGCATGGTCGATATTTTAGGTCGTTCTGGAAATCTGGAGGAAGCTGTAGAGTTGATAGAGAAAATGCCAATAGCTCCTACTGCTTCTGTATGGGGGGGCTCTTCTTGGGTAGCCATATGCTTGAGTTGGATCCCAGTAACCACAGAGTTTATGTACTCTTATCAAATATCTATGCCAAGACAGGGAAATGGGAAGAAGTTTCAGGCTCTCACCCTCTGTGCAAAGAAATATATTCAAAGGGATGAAATAGCAGAGAGATTGAAGTCAAATGGATACGTGCCAAACAAGTCACATCTACTGCAGTTTGTTGAGGAAGAAGACCATGCCCTAATCCTTCACAGCGAGAAATTAGGGATTGCATTCGGGCTTATCATCTTAAGTCCGTCTCAAGCAATTCAGGTTGTGAAGAATCTTCGTGTTTGCGGAGACTGCCACGCAGCTGCTAAGCTTATATCAAGGGTTAACGATAGGGAGATCTTGCTGAGAGATCGATATCGGTTTCATAATTTCAGAGACGGGCATTGCTCATGTAACGACTCTGTCTCTCCTTTTGGAAAAGACAAAAAGACAATGGAAACTCTTGCAGGATCCTCCATAACCTTGTTTGCCAAGGCTAACACTGACAAACCTCTCTCTCCCTCAAAATCTCTTCCGGGTCGATCCGACATTGGCTTTTTTGGGTATCGAAATTCCGACGTTCGCGTTCAGCATACCACCTCTCTGCTTCGACAGAAAGCGCTTCCATCGGTTGCTTCATCTCTGACAGAGGAATTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

398

Amino Acids

44.25

Weight (kDa)

9.25

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	229 - 318	1.2e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1116
AciI	CCGC	3 cut(s)	105, 273, 837
AclWI	GGATC	5 cut(s)	538, 551, 996, 1009, 1068
AcsI	RAATTY	1 cut(s)	1102
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	208, 569
AfeI	AGCGCT	1 cut(s)	1152
AfiI	CCNNNNNNNGG	2 cut(s)	383, 596
AflII	CTTAAG	1 cut(s)	790
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	650, 676
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	6 cut(s)	178, 244, 458, 488, 854, 862
AluI	AGCT	6 cut(s)	178, 244, 458, 488, 854, 862
Alw26I	GTCTC	4 cut(s)	804, 834, 921, 961
AlwI	GGATC	5 cut(s)	538, 551, 996, 1009, 1068
Aor51HI	AGCGCT	1 cut(s)	1152
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	175, 851, 854
ApoI	RAATTY	1 cut(s)	1102
AspLEI	GCGC	2 cut(s)	320, 1153
AsuC2I	CCSGG	1 cut(s)	1068
AsuHPI	GGTGA	4 cut(s)	71, 241, 292, 616
BaeGI	GKGCMC	1 cut(s)	262
BamHI	GGATCC	2 cut(s)	543, 1001
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	738
BbvI	GCAGC	3 cut(s)	187, 841, 863
BccI	CCATC	4 cut(s)	34, 103, 145, 1165
BciT130I	CCWGG	1 cut(s)	396
BciVI	GTATCC	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	1068
BcoDI	GTCTC	4 cut(s)	804, 834, 921, 961
BfmI	CTRYAG	3 cut(s)	459, 713, 1190
BfoI	RGCGCY	1 cut(s)	1154
BfrI	CTTAAG	1 cut(s)	790
BfuI	GTATCC	1 cut(s)	680
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	3 cut(s)	176, 852, 855
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	3 cut(s)	177, 853, 856
Bme1390I	CCNGG	2 cut(s)	396, 1068
BmgBI	CACGTC	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	375, 545, 1003
BmrFI	CCNGG	2 cut(s)	396, 1068
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	3 cut(s)	112, 556, 786
BpuMI	CCSGG	1 cut(s)	1068
Bsa29I	ATCGAT	1 cut(s)	904
BsaAI	YACGTR	1 cut(s)	691
BsaBI	GATNNNNATC	1 cut(s)	906
BsaJI	CCNNGG	2 cut(s)	276, 1023
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 596
Bse1I	ACTGG	2 cut(s)	377, 548
Bse3DI	GCAATG	1 cut(s)	934
Bse8I	GATNNNNATC	1 cut(s)	906
BseBI	CCWGG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	904
BseDI	CCNNGG	2 cut(s)	276, 1023
BseGI	GGATG	2 cut(s)	95, 661
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	2 cut(s)	383, 596
BseMI	GCAATG	1 cut(s)	934
BseMII	CTCAG	1 cut(s)	887
BseNI	ACTGG	2 cut(s)	377, 548
BseRI	GAGGAG	2 cut(s)	256, 259
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	187, 841, 863
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	1116
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	904
BsiEI	CGRYCG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	7, 1067
BslI	CCNNNNNNNGG	2 cut(s)	383, 596
BsmAI	GTCTC	4 cut(s)	804, 834, 921, 961
BsmBI	CGTCTC	2 cut(s)	804, 921
BsmI	GAATGC	1 cut(s)	773
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	262, 515
Bsp143I	GATC	5 cut(s)	543, 888, 901, 1001, 1073
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	3 cut(s)	105, 273, 837
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	888
BspDI	ATCGAT	1 cut(s)	904
BspFNI	CGCG	1 cut(s)	1116
BspLI	GGNNCC	3 cut(s)	375, 545, 1003
BspMAI	CTGCAG	1 cut(s)	717
BspPI	GGATC	5 cut(s)	538, 551, 996, 1009, 1068
BspQI	GCTCTTC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	934
BsrI	ACTGG	2 cut(s)	377, 548
BssECI	CCNNGG	2 cut(s)	276, 1023
BssMI	GATC	5 cut(s)	543, 888, 901, 1001, 1073
BssT1I	CCWWGG	2 cut(s)	276, 1023
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	253, 1191
Bst6I	CTCTTC	3 cut(s)	224, 520, 1068
BstAFI	CTTAAG	1 cut(s)	790
BstBAI	YACGTR	1 cut(s)	691
BstC8I	GCNNGC	4 cut(s)	238, 242, 330, 415
BstDEI	CTNAG	3 cut(s)	50, 858, 896
BstF5I	GGATG	2 cut(s)	95, 661
BstFNI	CGCG	1 cut(s)	1116
BstH2I	RGCGCY	1 cut(s)	1154
BstHHI	GCGC	2 cut(s)	320, 1153
BstKTI	GATC	5 cut(s)	546, 891, 904, 1004, 1076
BstMAI	GTCTC	4 cut(s)	804, 834, 921, 961
BstMBI	GATC	5 cut(s)	543, 888, 901, 1001, 1073
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 494, 843
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	394, 1066
BstSFI	CTRYAG	3 cut(s)	459, 713, 1190
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	1116
BstV1I	GCAGC	3 cut(s)	187, 841, 863
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	3 cut(s)	543, 888, 1001
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	3 cut(s)	543, 888, 1001
Bsu15I	ATCGAT	1 cut(s)	904
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	904
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	95, 661
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	157, 1032
Cac8I	GCNNGC	4 cut(s)	238, 242, 330, 415
CfoI	GCGC	2 cut(s)	320, 1153
ClaI	ATCGAT	1 cut(s)	904
Csp6I	GTAC	2 cut(s)	207, 568
CviAII	CATG	3 cut(s)	418, 737, 942
CviQI	GTAC	2 cut(s)	207, 568
DdeI	CTNAG	3 cut(s)	50, 858, 896
DpnI	GATC	5 cut(s)	545, 890, 903, 1003, 1075
DpnII	GATC	5 cut(s)	543, 888, 901, 1001, 1073
Eam1104I	CTCTTC	3 cut(s)	224, 520, 1068
EarI	CTCTTC	3 cut(s)	224, 520, 1068
EciI	GGCGGA	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	276, 1023
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	908
Eco47III	AGCGCT	1 cut(s)	1152
Eco57I	CTGAAG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	908
EcoT14I	CCWWGG	2 cut(s)	276, 1023
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	2 cut(s)	276, 1023
Esp3I	CGTCTC	2 cut(s)	804, 921
FaeI	CATG	3 cut(s)	421, 740, 945
FatI	CATG	3 cut(s)	417, 736, 941
FauNDI	CATATG	1 cut(s)	530
Fnu4HI	GCNGC	3 cut(s)	176, 852, 855
FokI	GGATG	2 cut(s)	82, 668
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	176, 852, 855
GlaI	GCGC	2 cut(s)	319, 1152
GluI	GCNGC	3 cut(s)	176, 852, 855
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	1154
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	7, 1067
HhaI	GCGC	2 cut(s)	320, 1153
Hin1II	CATG	3 cut(s)	421, 740, 945
Hin6I	GCGC	2 cut(s)	318, 1151
HinP1I	GCGC	2 cut(s)	318, 1151
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HindIII	AAGCTT	2 cut(s)	242, 860
HinfI	GANTC	2 cut(s)	823, 950
HpaI	GTTAAC	1 cut(s)	877
HpaII	CCGG	2 cut(s)	7, 1067
HphI	GGTGA	4 cut(s)	71, 241, 292, 616
Hpy166II	GTNNAC	4 cut(s)	190, 343, 382, 877
Hpy188I	TCNGA	4 cut(s)	926, 1078, 1108, 1176
Hpy188III	TCNNGA	2 cut(s)	441, 449
Hpy8I	GTNNAC	4 cut(s)	190, 343, 382, 877
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	3 cut(s)	224, 341, 758
HpyCH4III	ACNGT	2 cut(s)	253, 1191
HpyCH4IV	ACGT	4 cut(s)	76, 309, 690, 1110
HpyCH4V	TGCA	6 cut(s)	162, 417, 635, 715, 773, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 494, 843
HpyF3I	CTNAG	3 cut(s)	50, 858, 896
HpySE526I	ACGT	4 cut(s)	76, 309, 690, 1110
Hsp92II	CATG	3 cut(s)	421, 740, 945
HspAI	GCGC	2 cut(s)	318, 1151
KspAI	GTTAAC	1 cut(s)	877
Kzo9I	GATC	5 cut(s)	543, 888, 901, 1001, 1073
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	3 cut(s)	207, 373, 493
Lsp1109I	GCAGC	3 cut(s)	187, 841, 863
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	4 cut(s)	76, 309, 690, 1110
MaeIII	GTNAC	5 cut(s)	77, 295, 550, 702, 944
MalI	GATC	5 cut(s)	545, 890, 903, 1003, 1075
MboI	GATC	5 cut(s)	543, 888, 901, 1001, 1073
MboII	GAAGA	9 cut(s)	211, 363, 507, 619, 740, 743, 818, 832, 1055
MflI	RGATCY	3 cut(s)	543, 888, 1001
MhlI	GDGCHC	2 cut(s)	262, 515
MluCI	AATT	6 cut(s)	289, 761, 807, 919, 1102, 1184
MlyI	GAGTC	1 cut(s)	944
MmeI	TCCRAC	3 cut(s)	521, 1101, 1131
MseI	TTAA	3 cut(s)	302, 791, 876
MspA1I	CMGCKG	2 cut(s)	178, 854
MspCI	CTTAAG	1 cut(s)	790
MspI	CCGG	2 cut(s)	7, 1067
MspR9I	CCNGG	2 cut(s)	396, 1068
Mva1269I	GAATGC	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	1116
MwoI	GCNNNNNNNGC	3 cut(s)	181, 494, 843
NciI	CCSGG	1 cut(s)	1068
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	5 cut(s)	543, 888, 901, 1001, 1073
NlaIII	CATG	3 cut(s)	421, 740, 945
NlaIV	GGNNCC	3 cut(s)	375, 545, 1003
NmuCI	GTSAC	3 cut(s)	77, 295, 702
PceI	AGGCCT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	520
PctI	GAATGC	1 cut(s)	773
PfeI	GAWTC	1 cut(s)	823
PflFI	GACNNNGTC	1 cut(s)	953
PkrI	GCNGC	3 cut(s)	177, 853, 856
PleI	GAGTC	1 cut(s)	944
PpsI	GAGTC	1 cut(s)	944
Ppu21I	YACGTR	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	375, 545, 1003
PstI	CTGCAG	1 cut(s)	717
PsuI	RGATCY	3 cut(s)	543, 888, 1001
PsyI	GACNNNGTC	1 cut(s)	953
PvuII	CAGCTG	2 cut(s)	178, 854
RsaI	GTAC	2 cut(s)	208, 569
RsaNI	GTAC	2 cut(s)	207, 568
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	302, 791, 876
SatI	GCNGC	3 cut(s)	176, 852, 855
Sau3AI	GATC	5 cut(s)	543, 888, 901, 1001, 1073
SchI	GAGTC	1 cut(s)	944
ScrFI	CCNGG	2 cut(s)	396, 1068
SduI	GDGCHC	2 cut(s)	262, 515
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	3 cut(s)	459, 713, 1190
SmlI	CTYRAG	4 cut(s)	127, 535, 790, 801
SmoI	CTYRAG	4 cut(s)	127, 535, 790, 801
Sse9I	AATT	6 cut(s)	289, 761, 807, 919, 1102, 1184
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	3 cut(s)	105, 273, 837
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	394, 1066
StyI	CCWWGG	2 cut(s)	276, 1023
TaaI	ACNGT	2 cut(s)	253, 1191
TaiI	ACGT	4 cut(s)	79, 312, 693, 1113
TaqI	TCGA	7 cut(s)	153, 222, 423, 904, 1072, 1099, 1141
TasI	AATT	6 cut(s)	289, 761, 807, 919, 1102, 1184
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	3 cut(s)	302, 791, 876
Tru9I	TTAA	3 cut(s)	302, 791, 876
TscAI	CASTG	2 cut(s)	164, 1039
TseFI	GTSAC	3 cut(s)	77, 295, 702
TseI	GCWGC	3 cut(s)	175, 851, 854
Tsp45I	GTSAC	3 cut(s)	77, 295, 702
TspDTI	ATGAA	3 cut(s)	672, 905, 1158
TspGWI	ACGGA	3 cut(s)	194, 283, 786
TspRI	CASTG	2 cut(s)	164, 1039
Tth111I	GACNNNGTC	1 cut(s)	953
Vha464I	CTTAAG	1 cut(s)	790
XapI	RAATTY	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.