pycom11g06410

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
4884041 .. 4889358
5318 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGGGTATGCTCAGTCAGGAAATTATGATGAGGCTTGGTGGGTTTTCGCTGCAATGCCTGGTCAAGACATTGCTGCATGGAATGTCCTCATTTCGTCTTATGAACAAAGTGGCAAGCAAAAAAGGAAGAGCCCGAAACCTTATGAGCAACTCTAAGCACCCCCTGATATCTCTGCCACGTCAACCACCAAACCCTCCATCTCCAACCGCCACTAACGACCTTCATTTCTCAAGCGACCCACCTCTTTCCTCAATCGACCACTGCACCAGCATCAAGCAGCTGAAGCAAGTCCACTCCCAAATGCTCCGTACAGGCCTTCTCTTCGACCCCTACTCCGCCAGCAAGCTTATCACCGTCTGTGCCATCTCCTCCTTCTCCAGCCTCGACTATGCCCGCCAAATGTTCAACCAAATTCCCCAACCAAATCTCTACTCTTGGAACACCCTCATTCATGCTTATGCGTCGAGCACCGACCCGACTGAAAGCATGCTTGTATTTCTGGAAATGCTTTATCGCTGCATGGAAAGTTCCAATTTTTTACTTATGATGAGGCTTGGTGGGTTTTCGCTGCAATGCCTGGTCATGACATTGCTGCATGGAATGTCCTCATTTCGTCTTATGAACAAAGTGGCAAGCAAAAAAGGAAGAGCCCGAAACCTTATGAGTGAGCCTGTGCTCAATTGGGAGCAATTGATCTTGGTGGCTGGATACATGTTTACACAAAGAAGCAGGGTATGA

Protein Analysis

246

Amino Acids

27.65

Weight (kDa)

9.89

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 207, 336, 394
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 1 cut(s) 406
AjiI CACGTC 1 cut(s) 179
AjnI CCWGG 2 cut(s) 57, 576
AluBI AGCT 2 cut(s) 280, 346
AluI AGCT 2 cut(s) 280, 346
Alw21I GWGCWC 2 cut(s) 470, 678
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 6 cut(s) 49, 73, 277, 516, 568, 592
ApoI RAATTY 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 343
BanII GRGCYC 2 cut(s) 133, 652
Bbv12I GWGCWC 2 cut(s) 470, 678
BbvI GCAGC 6 cut(s) 36, 60, 289, 503, 555, 579
BccI CCATC 2 cut(s) 205, 371
BciT130I CCWGG 2 cut(s) 59, 578
BciVI GTATCC 1 cut(s) 701
BfuI GTATCC 1 cut(s) 701
BisI GCNGC 6 cut(s) 50, 74, 278, 517, 569, 593
BlsI GCNGC 6 cut(s) 51, 75, 279, 518, 570, 594
Bme1390I CCNGG 2 cut(s) 59, 578
BmgBI CACGTC 1 cut(s) 179
BmrFI CCNGG 2 cut(s) 59, 578
BmsI GCATC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bse3DI GCAATG 4 cut(s) 59, 68, 578, 587
BseBI CCWGG 2 cut(s) 59, 578
BseMI GCAATG 4 cut(s) 59, 68, 578, 587
BseMII CTCAG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 6 cut(s) 36, 60, 289, 503, 555, 579
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 470, 678
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 4 cut(s) 133, 470, 652, 678
Bsp143I GATC 1 cut(s) 693
BspACI CCGC 3 cut(s) 207, 336, 394
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 582
BspQI GCTCTTC 2 cut(s) 121, 640
BsrDI GCAATG 4 cut(s) 59, 68, 578, 587
BssMI GATC 1 cut(s) 693
Bst2UI CCWGG 2 cut(s) 59, 578
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 3 cut(s) 121, 326, 640
BstC8I GCNNGC 6 cut(s) 115, 340, 344, 394, 488, 634
BstDEI CTNAG 2 cut(s) 11, 153
BstKTI GATC 1 cut(s) 696
BstMBI GATC 1 cut(s) 693
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 2 cut(s) 59, 578
BstNSI RCATGY 2 cut(s) 490, 715
BstSCI CCNGG 2 cut(s) 57, 576
BstV1I GCAGC 6 cut(s) 36, 60, 289, 503, 555, 579
BsuI GTATCC 1 cut(s) 701
BsuRI GGCC 1 cut(s) 315
BtrI CACGTC 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 6 cut(s) 115, 340, 344, 394, 488, 634
CciI TCATGA 1 cut(s) 582
CseI GACGC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 309
CviAII CATG 7 cut(s) 77, 452, 487, 520, 583, 596, 712
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 11, 153
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
Eam1104I CTCTTC 3 cut(s) 121, 326, 640
EarI CTCTTC 3 cut(s) 121, 326, 640
EciI GGCGGA 1 cut(s) 325
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 133, 652
Eco32I GATATC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 57, 576
EcoRV GATATC 1 cut(s) 168
EcoT38I GRGCYC 2 cut(s) 133, 652
FaeI CATG 7 cut(s) 80, 455, 490, 523, 586, 599, 715
FatI CATG 7 cut(s) 76, 451, 486, 519, 582, 595, 711
FauI CCCGC 1 cut(s) 401
Fnu4HI GCNGC 6 cut(s) 50, 74, 278, 517, 569, 593
FriOI GRGCYC 2 cut(s) 133, 652
Fsp4HI GCNGC 6 cut(s) 50, 74, 278, 517, 569, 593
GluI GCNGC 6 cut(s) 50, 74, 278, 517, 569, 593
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 315
HgaI GACGC 1 cut(s) 450
Hin1II CATG 7 cut(s) 80, 455, 490, 523, 586, 599, 715
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 344
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 3 cut(s) 182, 292, 717
Hpy188III TCNNGA 4 cut(s) 17, 64, 500, 583
Hpy8I GTNNAC 3 cut(s) 182, 292, 717
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 3 cut(s) 230, 326, 382
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 6 cut(s) 52, 76, 264, 519, 571, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 11, 153
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 7 cut(s) 80, 455, 490, 523, 586, 599, 715
Kzo9I GATC 1 cut(s) 693
LguI GCTCTTC 2 cut(s) 121, 640
LmnI GCTCC 2 cut(s) 309, 685
Lsp1109I GCAGC 6 cut(s) 36, 60, 289, 503, 555, 579
LweI GCATC 1 cut(s) 279
MaeII ACGT 1 cut(s) 178
MalI GATC 1 cut(s) 695
MboI GATC 1 cut(s) 693
MboII GAAGA 3 cut(s) 138, 313, 657
MfeI CAATTG 2 cut(s) 679, 689
MhlI GDGCHC 4 cut(s) 133, 470, 652, 678
MluCI AATT 5 cut(s) 21, 411, 532, 679, 689
MmeI TCCRAC 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 280
MspR9I CCNGG 2 cut(s) 59, 578
MunI CAATTG 2 cut(s) 679, 689
MvaI CCWGG 2 cut(s) 59, 578
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 693
NlaIII CATG 7 cut(s) 80, 455, 490, 523, 586, 599, 715
NspI RCATGY 2 cut(s) 490, 715
PaeI GCATGC 1 cut(s) 490
PagI TCATGA 1 cut(s) 582
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 711
PciSI GCTCTTC 2 cut(s) 121, 640
PkrI GCNGC 6 cut(s) 51, 75, 279, 518, 570, 594
PscI ACATGT 1 cut(s) 711
Psp6I CCWGG 2 cut(s) 57, 576
PspGI CCWGG 2 cut(s) 57, 576
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 456
SapI GCTCTTC 2 cut(s) 121, 640
SatI GCNGC 6 cut(s) 50, 74, 278, 517, 569, 593
Sau3AI GATC 1 cut(s) 693
ScrFI CCNGG 2 cut(s) 59, 578
SduI GDGCHC 4 cut(s) 133, 470, 652, 678
SetI ASST 7 cut(s) 141, 181, 222, 244, 282, 348, 660
SfaNI GCATC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SphI GCATGC 1 cut(s) 490
Sse9I AATT 5 cut(s) 21, 411, 532, 679, 689
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 3 cut(s) 207, 336, 394
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 57, 576
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 181
TaqI TCGA 4 cut(s) 255, 324, 384, 464
TasI AATT 5 cut(s) 21, 411, 532, 679, 689
TscAI CASTG 1 cut(s) 266
TseI GCWGC 6 cut(s) 49, 73, 277, 516, 568, 592
TspDTI ATGAA 4 cut(s) 116, 212, 440, 635
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 266
XapI RAATTY 1 cut(s) 411
XceI RCATGY 2 cut(s) 490, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.