Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5562663 .. 5564853

Gene Structure 2191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGAAACGTTTTCTGCCTTTGCTTCCGGCCGCACAGCACCATATCAAATTTCGATGACTCGTTAGACGCAGAGAATGTGGGGAGAGACCAAGTGTACTCTCTGTCTCCGGTGCCGGGGTTCAGTGAGTTCAGCCTGCACCAGCTGAGAGCTGCCACGTTGCAGTTCTCGTCGGAGAAAGTTGTCTCCAAGCATGGCGAGAATGCTCCGAATGTGGTCTACAAAGGCAAGCTCCAAGACGGCCGCTGCATCGCCGTTAAGCGTTTCAGCTGCTCCGCTTGGCCCGATTCCCGCCAATTTCTGGAGAAAGCTAGAGCTGTGGGGCGGCTGAGGAACAAGCGTTTGGCGAATCTGATCGGGTTCTGCTGTGAAGGGGATGAGAGATTGCTTGTGGCAGAGTTCATGCCTAATGGTACTCTCTCCGAGCATCTTTTCCATTGCGAGAACCAGCCTATGAAATGGGCAATGAGGTTGCGAGTGGCTTTGTACACGGCGCAAGCTTTGGCATACTGCAGCAGTAAAGAGCGGGCATCGTACCATGATCTTAATACTTGCAAAGTCCTGTTTGATCAGGAATTAAATCCCAGACTCTCCTGCTTTGGACTTATGAAGAATATAAAAGATGGCCAGAGTTATAGTACCAACCTCGCTTTCAACCCTACCAAATACGCGAAGAAAGGAAAAATGATACCAGAAGGTGTGGTTTACGGCTTTGGAACCCTATTGCTTGATCTGCTCAGCGGTAGACGTATCCCGCCAGCTCATGCGCTTGACCTCATACGCGATAAAAGTTTGTTGATGCTGTTGGACTCGTGCTTAGAAGGTCATGTTTCAAATGATGACGGAACTGCGGTGGTGCAGTTAGCTTCACAATGCTTGCAGTCTGAACCTCATAAGAGGCCGAATATCAATTCTCTTGTGACTTCCCTTGTCCCTCTTCAAAAAGAAATTGAGGTTCCGTCATATGTTTTGATGGGTACCCCCGATGGAAATGTGCCCCCAAAACCGATATCGCTGTCACCTCTAGCTGACGCTTGCACAAGATTGGATCTTACAGGCTACAGCAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

358

Amino Acids

39.58

Weight (kDa)

8.36

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	69 - 310	9.4e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	69 - 307	2.3e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	2 cut(s)	112, 977
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	526
AccI	GTMKAC	2 cut(s)	219, 745
AccII	CGCG	2 cut(s)	671, 783
AciI	CCGC	9 cut(s)	32, 244, 276, 292, 325, 526, 741, 755, 851
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	1056
AcoI	YGGCCR	3 cut(s)	29, 241, 625
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	6 cut(s)	98, 415, 488, 536, 640, 979
AfiI	CCNNNNNNNGG	2 cut(s)	116, 301
AgsI	TTSAA	3 cut(s)	655, 834, 941
AjuI	GAANNNNNNNTTGG	4 cut(s)	326, 358, 635, 667
Alw26I	GTCTC	3 cut(s)	81, 111, 190
AlwI	GGATC	1 cut(s)	1056
AoxI	GGCC	5 cut(s)	29, 241, 281, 625, 899
ApeKI	GCWGC	4 cut(s)	152, 246, 270, 513
ApoI	RAATTY	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	977
AspLEI	GCGC	2 cut(s)	496, 769
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	1011
BaeGI	GKGCMC	1 cut(s)	999
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	2 cut(s)	112, 977
BauI	CACGAG	1 cut(s)	811
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	4 cut(s)	139, 233, 257, 525
BccI	CCATC	3 cut(s)	617, 967, 980
BceAI	ACGGC	4 cut(s)	239, 256, 507, 724
BciVI	GTATCC	1 cut(s)	761
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	81, 111, 190
BfaI	CTAG	2 cut(s)	312, 1025
BfmI	CTRYAG	2 cut(s)	511, 1060
BfuI	GTATCC	1 cut(s)	761
BisI	GCNGC	7 cut(s)	32, 153, 244, 247, 271, 326, 514
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	7 cut(s)	33, 154, 245, 248, 272, 327, 515
Bme1390I	CCNGG	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	4 cut(s)	114, 718, 957, 979
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	4 cut(s)	258, 436, 539, 789
BpmI	CTGGAG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 301
Bse3DI	GCAATG	2 cut(s)	436, 471
BseDI	CCNNGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	2 cut(s)	116, 301
BseMI	GCAATG	2 cut(s)	436, 471
BseMII	CTCAG	3 cut(s)	137, 320, 751
BseSI	GKGCMC	1 cut(s)	999
BseX3I	CGGCCG	2 cut(s)	29, 241
BseXI	GCAGC	4 cut(s)	139, 233, 257, 525
BsgI	GTGCAG	2 cut(s)	122, 878
Bsh1236I	CGCG	2 cut(s)	671, 783
Bsh1285I	CGRYCG	2 cut(s)	32, 244
BshFI	GGCC	5 cut(s)	31, 243, 283, 627, 901
BshNI	GGYRCC	2 cut(s)	112, 977
BsiEI	CGRYCG	2 cut(s)	32, 244
BsiSI	CCGG	3 cut(s)	28, 110, 116
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	2 cut(s)	116, 301
BsmAI	GTCTC	3 cut(s)	81, 111, 190
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	5 cut(s)	31, 243, 283, 627, 901
Bso31I	GGTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	999
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	354, 541, 568, 730, 1048
Bsp1720I	GCTNAGC	1 cut(s)	737
BspACI	CCGC	9 cut(s)	32, 244, 276, 292, 325, 526, 741, 755, 851
BspANI	GGCC	5 cut(s)	31, 243, 283, 627, 901
BspCNI	CTCAG	3 cut(s)	138, 321, 750
BspFNI	CGCG	2 cut(s)	671, 783
BspLI	GGNNCC	4 cut(s)	114, 718, 957, 979
BspMAI	CTGCAG	1 cut(s)	515
BspPI	GGATC	1 cut(s)	1056
BspT107I	GGYRCC	2 cut(s)	112, 977
BspTNI	GGTCTC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	526
BsrDI	GCAATG	2 cut(s)	436, 471
BsrGI	TGTACA	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	5 cut(s)	354, 541, 568, 730, 1048
BssSI	CACGAG	1 cut(s)	811
Bst2BI	CACGAG	1 cut(s)	811
Bst6I	CTCTTC	1 cut(s)	942
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	7 cut(s)	137, 230, 498, 528, 759, 878, 1036
BstDEI	CTNAG	4 cut(s)	146, 329, 737, 817
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	671, 783
BstHHI	GCGC	2 cut(s)	496, 769
BstKTI	GATC	5 cut(s)	357, 544, 571, 733, 1051
BstMAI	GTCTC	3 cut(s)	81, 111, 190
BstMBI	GATC	5 cut(s)	354, 541, 568, 730, 1048
BstMCI	CGRYCG	2 cut(s)	32, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	511, 1060
BstSLI	GKGCMC	1 cut(s)	999
BstUI	CGCG	2 cut(s)	671, 783
BstV1I	GCAGC	4 cut(s)	139, 233, 257, 525
BstX2I	RGATCY	1 cut(s)	1048
BstYI	RGATCY	1 cut(s)	1048
BstZI	CGGCCG	2 cut(s)	29, 241
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	5 cut(s)	31, 243, 283, 627, 901
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	7 cut(s)	137, 230, 498, 528, 759, 878, 1036
CfoI	GCGC	2 cut(s)	496, 769
Cfr13I	GGNCC	1 cut(s)	282
CseI	GACGC	2 cut(s)	77, 1040
Csp6I	GTAC	6 cut(s)	97, 414, 487, 535, 639, 978
CviAII	CATG	6 cut(s)	194, 403, 539, 764, 827, 1071
CviQI	GTAC	6 cut(s)	97, 414, 487, 535, 639, 978
DdeI	CTNAG	4 cut(s)	146, 329, 737, 817
DpnI	GATC	5 cut(s)	356, 543, 570, 732, 1050
DpnII	GATC	5 cut(s)	354, 541, 568, 730, 1048
EaeI	YGGCCR	3 cut(s)	29, 241, 625
EagI	CGGCCG	2 cut(s)	29, 241
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
EclXI	CGGCCG	2 cut(s)	29, 241
Eco31I	GGTCTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	1011
Eco52I	CGGCCG	2 cut(s)	29, 241
EcoRV	GATATC	1 cut(s)	1011
FaeI	CATG	6 cut(s)	197, 406, 542, 767, 830, 1074
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	6 cut(s)	193, 402, 538, 763, 826, 1070
FauI	CCCGC	3 cut(s)	299, 519, 762
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	2 cut(s)	219, 745
Fnu4HI	GCNGC	7 cut(s)	32, 153, 244, 247, 271, 326, 514
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	7 cut(s)	32, 153, 244, 247, 271, 326, 514
FspBI	CTAG	2 cut(s)	312, 1025
GlaI	GCGC	2 cut(s)	495, 768
GluI	GCNGC	7 cut(s)	32, 153, 244, 247, 271, 326, 514
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	5 cut(s)	31, 243, 283, 627, 901
HapII	CCGG	3 cut(s)	28, 110, 116
HgaI	GACGC	2 cut(s)	77, 1040
HhaI	GCGC	2 cut(s)	496, 769
Hin1II	CATG	6 cut(s)	197, 406, 542, 767, 830, 1074
Hin6I	GCGC	2 cut(s)	494, 767
HinP1I	GCGC	2 cut(s)	494, 767
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	5 cut(s)	59, 287, 349, 588, 809
HpaII	CCGG	3 cut(s)	28, 110, 116
HphI	GGTGA	1 cut(s)	1011
Hpy166II	GTNNAC	5 cut(s)	97, 220, 489, 706, 746
Hpy188I	TCNGA	5 cut(s)	175, 210, 354, 424, 886
Hpy188III	TCNNGA	2 cut(s)	302, 572
Hpy8I	GTNNAC	5 cut(s)	97, 220, 489, 706, 746
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	365, 689, 815
HpyCH4IV	ACGT	3 cut(s)	9, 158, 748
HpyCH4V	TGCA	8 cut(s)	139, 163, 249, 513, 555, 859, 880, 1038
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	4 cut(s)	146, 329, 737, 817
HpySE526I	ACGT	3 cut(s)	9, 158, 748
Hsp92II	CATG	6 cut(s)	197, 406, 542, 767, 830, 1074
HspAI	GCGC	2 cut(s)	494, 767
KpnI	GGTACC	1 cut(s)	981
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	354, 541, 568, 730, 1048
LmnI	GCTCC	3 cut(s)	211, 237, 278
Lsp1109I	GCAGC	4 cut(s)	139, 233, 257, 525
LweI	GCATC	4 cut(s)	258, 436, 539, 789
MaeI	CTAG	2 cut(s)	312, 1025
MaeII	ACGT	3 cut(s)	9, 158, 748
MaeIII	GTNAC	2 cut(s)	919, 1017
MalI	GATC	5 cut(s)	356, 543, 570, 732, 1050
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	5 cut(s)	354, 541, 568, 730, 1048
MboII	GAAGA	3 cut(s)	622, 685, 929
MflI	RGATCY	1 cut(s)	1048
MhlI	GDGCHC	1 cut(s)	999
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	5 cut(s)	49, 296, 575, 910, 948
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	3 cut(s)	53, 582, 803
MmeI	TCCRAC	2 cut(s)	153, 786
MnlI	CCTC	9 cut(s)	324, 462, 656, 785, 891, 900, 945, 946, 1032
Mox20I	TGGCCA	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	3 cut(s)	258, 546, 578
Msp20I	TGGCCA	1 cut(s)	627
MspA1I	CMGCKG	4 cut(s)	145, 246, 270, 741
MspI	CCGG	3 cut(s)	28, 110, 116
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	208
MvnI	CGCG	2 cut(s)	671, 783
MwoI	GCNNNNNNNGC	1 cut(s)	733
NciI	CCSGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	5 cut(s)	354, 541, 568, 730, 1048
NlaIII	CATG	6 cut(s)	197, 406, 542, 767, 830, 1074
NlaIV	GGNNCC	4 cut(s)	114, 718, 957, 979
NmuCI	GTSAC	2 cut(s)	919, 1017
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	287, 349
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	7 cut(s)	33, 154, 245, 248, 272, 327, 515
PleI	GAGTC	3 cut(s)	53, 582, 803
PpsI	GAGTC	3 cut(s)	53, 582, 803
Psp1406I	AACGTT	1 cut(s)	9
PspN4I	GGNNCC	4 cut(s)	114, 718, 957, 979
PspPI	GGNCC	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	1048
PvuII	CAGCTG	2 cut(s)	145, 270
RsaI	GTAC	6 cut(s)	98, 415, 488, 536, 640, 979
RsaNI	GTAC	6 cut(s)	97, 414, 487, 535, 639, 978
SaqAI	TTAA	3 cut(s)	258, 546, 578
SatI	GCNGC	7 cut(s)	32, 153, 244, 247, 271, 326, 514
Sau3AI	GATC	5 cut(s)	354, 541, 568, 730, 1048
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	3 cut(s)	53, 582, 803
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	999
SfaNI	GCATC	4 cut(s)	258, 436, 539, 789
SfcI	CTRYAG	2 cut(s)	511, 1060
Sse9I	AATT	5 cut(s)	49, 296, 575, 910, 948
SsiI	CCGC	9 cut(s)	32, 244, 276, 292, 325, 526, 741, 755, 851
SspMI	CTAG	2 cut(s)	312, 1025
StyD4I	CCNGG	1 cut(s)	115
TaiI	ACGT	3 cut(s)	12, 161, 751
TaqI	TCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	49, 296, 575, 910, 948
TatI	WGTACW	2 cut(s)	96, 486
TauI	GCSGC	3 cut(s)	34, 246, 328
TfiI	GAWTC	2 cut(s)	287, 349
Tru1I	TTAA	3 cut(s)	258, 546, 578
Tru9I	TTAA	3 cut(s)	258, 546, 578
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	919, 1017
TseI	GCWGC	4 cut(s)	152, 246, 270, 513
Tsp45I	GTSAC	2 cut(s)	919, 1017
TspDTI	ATGAA	3 cut(s)	391, 470, 623
TspGWI	ACGGA	2 cut(s)	858, 948
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	219, 745
XspI	CTAG	2 cut(s)	312, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.