pycom11g08420

protein C20orf24 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
6531288 .. 6533115
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 657 bp
ATGAGAACTGGTGTAAAAAGTCAGTCCCAATCGCAATCTACAGCGAAGCTATTCCATTTTTGTATTCAATTATTCAATTTTATTTGCTTTTCAAATTTAATCACTTTCCTCTCTCTCTCTCTGTGTTCTCCGGCCAAATCCAAAAACCCTAACGAGGTCCGATCATCCCTCTGCAAGTTCGGCAGAAGCCCACTGAATTTTGTGAAGATTTGGGGTCGATTGTTATTGTTTTGGATAAAATTTGTGATTTTGCAAAGCATGAAAGAAGGGAAGTCAGTAAAATTGAACGGTCAACAGCAGCAGCCGCAGCCGCCGCAGCACCAGAACGGTCACTTGTCGCCGTTCAAATTCGCCAAGTTGTTGGATCCGGAAGCTTCCTGGGACAAGGATCAATTGGGAGATGTCTTGCATTGGATTCGACAAGCAATGGCCCTCGCATGTGGGCTACTGTGGGGTGCAATACCATTGGTCGGAGGCATATGGTTCGTCATTTTTTTGGTAATATCAACTGGAATCATATATGGCTACTACGCAATGATACTAAGGGTTGACGAAGAAGACTTTGGTGGTCATGGAGCTCTCCTCCAAGAGGGGCTTTTCGCTTCCATAACTCTTTTTCTGGTATTTTTCAAACTTTTATTGCCTCTTTCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

219

Amino Acids

24.58

Weight (kDa)

9.4

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 135 - 210 2.3e-13 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 3 cut(s) 305, 311, 314
AclWI GGATC 3 cut(s) 359, 372, 396
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 4 cut(s) 94, 196, 239, 347
AfiI CCNNNNNNNGG 3 cut(s) 154, 470, 589
AgsI TTSAA 6 cut(s) 68, 76, 93, 286, 346, 631
AjnI CCWGG 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AluBI AGCT 3 cut(s) 49, 374, 578
AluI AGCT 3 cut(s) 49, 374, 578
Alw21I GWGCWC 1 cut(s) 580
AlwI GGATC 3 cut(s) 359, 372, 396
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 2 cut(s) 132, 429
ApeKI GCWGC 4 cut(s) 298, 301, 307, 316
ApoI RAATTY 4 cut(s) 94, 196, 239, 347
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 157, 430
AvaII GGWCC 1 cut(s) 157
BamHI GGATCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 310, 313, 319, 328
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 4 cut(s) 398, 432, 466, 500
BciT130I CCWGG 1 cut(s) 379
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 7 cut(s) 299, 302, 305, 308, 311, 314, 317
BlsI GCNGC 7 cut(s) 300, 303, 306, 309, 312, 315, 318
Bme1390I CCNGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 157, 430
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 567, 599
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 470, 589
Bse1I ACTGG 2 cut(s) 13, 514
Bse3DI GCAATG 2 cut(s) 432, 540
BseAI TCCGGA 1 cut(s) 367
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 154, 470, 589
BseMI GCAATG 2 cut(s) 432, 540
BseNI ACTGG 2 cut(s) 13, 514
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 4 cut(s) 310, 313, 319, 328
BshFI GGCC 2 cut(s) 134, 431
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 2 cut(s) 131, 368
BslFI GGGAC 2 cut(s) 10, 395
BslI CCNNNNNNNGG 3 cut(s) 154, 470, 589
BsmFI GGGAC 2 cut(s) 10, 395
BsnI GGCC 2 cut(s) 134, 431
Bsp1286I GDGCHC 1 cut(s) 580
Bsp13I TCCGGA 1 cut(s) 367
Bsp143I GATC 3 cut(s) 161, 364, 388
BspACI CCGC 3 cut(s) 305, 311, 314
BspANI GGCC 2 cut(s) 134, 431
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 3 cut(s) 359, 372, 396
BsrDI GCAATG 2 cut(s) 432, 540
BsrI ACTGG 2 cut(s) 13, 514
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 161, 364, 388
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 3 cut(s) 290, 329, 450
BstDEI CTNAG 1 cut(s) 542
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 3 cut(s) 164, 367, 391
BstMBI GATC 3 cut(s) 161, 364, 388
BstMWI GCNNNNNNNGC 6 cut(s) 180, 304, 307, 310, 313, 316
BstNI CCWGG 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 310, 313, 319, 328
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 134, 431
BtsCI GGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 157, 430
CviAII CATG 3 cut(s) 259, 438, 572
DdeI CTNAG 1 cut(s) 542
DpnI GATC 3 cut(s) 163, 366, 390
DpnII GATC 3 cut(s) 161, 364, 388
EaeI YGGCCR 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 578
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 580
FaeI CATG 3 cut(s) 262, 441, 575
FaiI YATR 9 cut(s) 260, 439, 479, 481, 518, 520, 522, 573, 608
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 2 cut(s) 10, 395
FatI CATG 3 cut(s) 258, 437, 571
FauNDI CATATG 1 cut(s) 479
Fnu4HI GCNGC 7 cut(s) 299, 302, 305, 308, 311, 314, 317
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 7 cut(s) 299, 302, 305, 308, 311, 314, 317
GluI GCNGC 7 cut(s) 299, 302, 305, 308, 311, 314, 317
HaeIII GGCC 2 cut(s) 134, 431
HapII CCGG 2 cut(s) 131, 368
Hin1II CATG 3 cut(s) 262, 441, 575
HincII GTYRAC 2 cut(s) 293, 550
HindII GTYRAC 2 cut(s) 293, 550
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 415, 513
HpaII CCGG 2 cut(s) 131, 368
Hpy166II GTNNAC 2 cut(s) 293, 550
Hpy188I TCNGA 2 cut(s) 161, 473
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 293, 550
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 3 cut(s) 290, 329, 450
HpyCH4V TGCA 4 cut(s) 174, 253, 409, 458
HpyF10VI GCNNNNNNNGC 6 cut(s) 180, 304, 307, 310, 313, 316
HpyF3I CTNAG 1 cut(s) 542
Hsp92II CATG 3 cut(s) 262, 441, 575
Kpn2I TCCGGA 1 cut(s) 367
Kzo9I GATC 3 cut(s) 161, 364, 388
LmnI GCTCC 1 cut(s) 575
LpnPI CCDG 7 cut(s) 144, 335, 364, 381, 391, 495, 605
Lsp1109I GCAGC 4 cut(s) 310, 313, 319, 328
MaeIII GTNAC 1 cut(s) 329
MalI GATC 3 cut(s) 163, 366, 390
MboI GATC 3 cut(s) 161, 364, 388
MboII GAAGA 3 cut(s) 217, 566, 569
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 8 cut(s) 68, 76, 94, 196, 239, 281, 347, 392
MmeI TCCRAC 2 cut(s) 342, 451
MnlI CCTC 8 cut(s) 119, 148, 179, 443, 467, 583, 593, 654
MroI TCCGGA 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 98
MspI CCGG 2 cut(s) 131, 368
MspR9I CCNGG 1 cut(s) 379
MunI CAATTG 1 cut(s) 392
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 6 cut(s) 180, 304, 307, 310, 313, 316
NdeI CATATG 1 cut(s) 479
NdeII GATC 3 cut(s) 161, 364, 388
NlaIII CATG 3 cut(s) 262, 441, 575
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 415, 513
PkrI GCNGC 7 cut(s) 300, 303, 306, 309, 312, 315, 318
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 157, 430
PsuI RGATCY 1 cut(s) 364
SacI GAGCTC 1 cut(s) 580
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 7 cut(s) 299, 302, 305, 308, 311, 314, 317
Sau3AI GATC 3 cut(s) 161, 364, 388
Sau96I GGNCC 2 cut(s) 157, 430
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 1 cut(s) 580
SetI ASST 4 cut(s) 51, 159, 376, 580
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 157
Sse9I AATT 8 cut(s) 68, 76, 94, 196, 239, 281, 347, 392
SsiI CCGC 3 cut(s) 305, 311, 314
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 290, 329, 450
TaqI TCGA 2 cut(s) 217, 418
TasI AATT 8 cut(s) 68, 76, 94, 196, 239, 281, 347, 392
TauI GCSGC 3 cut(s) 307, 313, 316
TfiI GAWTC 2 cut(s) 415, 513
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 4 cut(s) 298, 301, 307, 316
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 4 cut(s) 94, 196, 239, 347
XceI RCATGY 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.