pycom11g09370

Belongs to the actin-binding proteins ADF family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
7547476 .. 7549850
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGATAGGACAGACCTACCTTCTCCTTAGAGGGAGTGGGGAAGTAGGTGAAGGAGAAGCCACAACAACCACCACCGTCTCGGCAGCAAAAGCCGTTCAAAGCACACACCAAACGCCAGAGAGCAATCAGTCCTCCATTTTCTGCCATAGTCGCAGCAACTCAGCTCGTTTTCGTTTGGGGATAGATTTTTCTGCAACCGCAATGGAACAGGCTAACGCAGCGTCCGGTTTTGCTGTGGATGATGACTGCAAGCTGAAGTTTCTGGAATTGAAGGCAAAGAGAACATATCGCTTCATAGTGTTCAAGATTGACGAGAAGAAAAATGAGGTGATTGTGGAGAAACTCGGTGAGCCAGCTGAAAGCTACGAAGACTTTACTGCAAACCTTCCTGATAATGAATGCAGATATGCTGTCTATGATTTTGACTTTGTGACTGCAGAGAATTGTCAGAAAAGCAGGATTTTCTTCATCGGATGGTCTCCCGACACAGCAAGGGTGAGAAACAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAATTGGATGGCATACAAGTCGAGCTGCAGGCTATCGATCCGACTGAGATAGGCCTCGATGTTATCAAAAGTCGTGCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

209

Amino Acids

23.31

Weight (kDa)

5.38

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 76 - 207 8.5e-41 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 531
AgsI TTSAA 4 cut(s) 98, 271, 304, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 6 cut(s) 164, 253, 356, 363, 522, 568
AluI AGCT 6 cut(s) 164, 253, 356, 363, 522, 568
Alw26I GTCTC 2 cut(s) 82, 483
AlwI GGATC 1 cut(s) 575
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 4 cut(s) 83, 153, 218, 568
AsuHPI GGTGA 4 cut(s) 59, 340, 359, 508
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 95, 165, 230, 555
BccI CCATC 2 cut(s) 468, 545
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 544, 578
BcoDI GTCTC 2 cut(s) 82, 483
BfmI CTRYAG 2 cut(s) 435, 569
BisI GCNGC 4 cut(s) 84, 154, 219, 569
BlsI GCNGC 4 cut(s) 85, 155, 220, 570
BpiI GAAGAC 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 525
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 3 cut(s) 244, 479, 556
BseLI CCNNNNNNNGG 1 cut(s) 531
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 174, 579
BseXI GCAGC 4 cut(s) 95, 165, 230, 555
BshFI GGCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 579
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 2 cut(s) 82, 483
BsmBI CGTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 483
Bsp143I GATC 1 cut(s) 580
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 2 cut(s) 173, 580
BspDI ATCGAT 1 cut(s) 579
BspMAI CTGCAG 2 cut(s) 439, 573
BspPI GGATC 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 4 cut(s) 251, 354, 520, 573
BstDEI CTNAG 3 cut(s) 26, 160, 588
BstF5I GGATG 3 cut(s) 244, 479, 556
BstKTI GATC 1 cut(s) 583
BstMAI GTCTC 2 cut(s) 82, 483
BstMBI GATC 1 cut(s) 580
BstMWI GCNNNNNNNGC 3 cut(s) 89, 150, 218
BstSFI CTRYAG 2 cut(s) 435, 569
BstV1I GCAGC 4 cut(s) 95, 165, 230, 555
BstV2I GAAGAC 1 cut(s) 375
Bsu15I ATCGAT 1 cut(s) 579
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 579
BtsCI GGATG 3 cut(s) 244, 479, 556
Cac8I GCNNGC 4 cut(s) 251, 354, 520, 573
ClaI ATCGAT 1 cut(s) 579
CseI GACGC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 26, 160, 588
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 525
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 1 cut(s) 82
FaiI YATR 7 cut(s) 147, 286, 296, 408, 417, 516, 557
Fnu4HI GCNGC 4 cut(s) 84, 154, 219, 569
FokI GGATG 3 cut(s) 251, 486, 563
Fsp4HI GCNGC 4 cut(s) 84, 154, 219, 569
GluI GCNGC 4 cut(s) 84, 154, 219, 569
HaeIII GGCC 1 cut(s) 597
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 210
HpaII CCGG 1 cut(s) 225
HphI GGTGA 4 cut(s) 59, 340, 359, 508
Hpy188I TCNGA 3 cut(s) 450, 473, 585
Hpy188III TCNNGA 5 cut(s) 263, 304, 389, 482, 538
HpyAV CCTTC 4 cut(s) 29, 44, 265, 395
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 8 cut(s) 194, 249, 380, 402, 437, 518, 571, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 150, 218
HpyF3I CTNAG 3 cut(s) 26, 160, 588
Kzo9I GATC 1 cut(s) 580
LmnI GCTCC 1 cut(s) 527
LpnPI CCDG 9 cut(s) 129, 194, 238, 248, 366, 402, 442, 517, 557
Lsp1109I GCAGC 4 cut(s) 95, 165, 230, 555
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 3 cut(s) 328, 380, 457
MluCI AATT 3 cut(s) 266, 442, 545
MmeI TCCRAC 1 cut(s) 608
MnlI CCTC 4 cut(s) 23, 142, 319, 608
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 404
MwoI GCNNNNNNNGC 3 cut(s) 89, 150, 218
NdeII GATC 1 cut(s) 580
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 430
PceI AGGCCT 1 cut(s) 597
PctI GAATGC 1 cut(s) 404
PkrI GCNGC 4 cut(s) 85, 155, 220, 570
PstI CTGCAG 2 cut(s) 439, 573
PvuII CAGCTG 1 cut(s) 356
SatI GCNGC 4 cut(s) 84, 154, 219, 569
Sau3AI GATC 1 cut(s) 580
SfcI CTRYAG 2 cut(s) 435, 569
Sse9I AATT 3 cut(s) 266, 442, 545
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 597
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 564, 579, 600
TasI AATT 3 cut(s) 266, 442, 545
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 4 cut(s) 83, 153, 218, 568
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 283, 411, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.