Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7925060 .. 7925320

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCATTGTGGTTACCATGCCAGAGATTGCGAAAGAGTTCCTCAAAACCCACGAGCTCTCCTACATATCCTGTGCTCAAACCATCGAACGCCTGACCTACAATCACTCTATCACAGGATTTGCACCCTATGGCCTTACTATAAATTGATCATAAACCTCAGCGTTAATGATGTCCTAAGCAACCGTAATGTCAGCAACTTTGCTTCAATTTTTAACCCAAGAGTACCCAAGGCTTTGGAGGTTGCGGGCCAAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

87

Amino Acids

9.92

Weight (kDa)

9.34

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	207
AluBI	AGCT	2 cut(s)	56, 258
AluI	AGCT	2 cut(s)	56, 258
Alw21I	GWGCWC	2 cut(s)	58, 77
AoxI	GGCC	2 cut(s)	131, 247
Asp700I	GAANNNNTTC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	58, 77
BbvCI	CCTCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	247
Bpu10I	CCTNAGC	2 cut(s)	158, 176
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
BseDI	CCNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	133, 249
BsiHKAI	GWGCWC	2 cut(s)	58, 77
BsnI	GGCC	2 cut(s)	133, 249
Bsp1286I	GDGCHC	2 cut(s)	58, 77
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	133, 249
BspCNI	CTCAG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	158, 176
BstEII	GGTNACC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstPI	GGTNACC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	133, 249
Cac8I	GCNNGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	5 cut(s)	56, 133, 233, 249, 258
CviKI_1	RGCY	5 cut(s)	56, 133, 233, 249, 258
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	158, 176
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	20
FaiI	YATR	5 cut(s)	18, 66, 130, 141, 152
FatI	CATG	1 cut(s)	16
FauI	CCCGC	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	133, 249
Hin1II	CATG	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	4, 123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	158, 176
Hsp92II	CATG	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	147
LpnPI	CCDG	4 cut(s)	34, 83, 100, 105
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	58, 77
MluCI	AATT	2 cut(s)	143, 207
MnlI	CCTC	3 cut(s)	51, 167, 232
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	165, 213
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	247
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	165, 213
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	58, 77
SetI	ASST	5 cut(s)	58, 99, 159, 243, 260
SgeI	CNNG	9 cut(s)	29, 33, 63, 65, 82, 104, 127, 231, 241
Sse9I	AATT	2 cut(s)	143, 207
SsiI	CCGC	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	143, 207
Tru1I	TTAA	2 cut(s)	165, 213
Tru9I	TTAA	2 cut(s)	165, 213
XmnI	GAANNNNTTC	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.