pycom11g09960

respiratory burst oxidase homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
8337254 .. 8338383
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 831 bp
ATGGATTCAAGTATAAAAGTGGAATGTACCTCTTTCTTAAGTGCCCTGATATATCAGGTTTTGAATGGTAACAAAAATTACATAGTTGCTATCATGATCCGAAATCATAATATCTCTACACAAATTAAACACTTCGTTCACTACAGGCATCCCTTCACCATCACTTCTGCCCCAGGAGATGACTACTTGAGCGTCCACATACGAAGCTTGGGAGACTGGACTACGGAGCTTAGAGAAAGATTCGAAAAGAAATTTGGAAAACTGACCATTTCTTTTAAACAAATCTTGAATTCTTTAATCTCTACTGCATACTTCTTCAAATATATGCAGGCGTGCAGCCAGCTTCAAAGTACACAAACTAGAAAGGGAAATCTCGTTAGAATAGAAACGAAAGCACATTCAAACTACGGTCATGAAATAGAAGGGTATATCCGAAGATCGATCATAAAGGGACCATATGGTGCACCGGCTCAAAATTACATAAAGTTTGACATCTTATTGCGCATAGGTCTGGGAATTGGAGCAACTCCCTTCGTCAGCATCATAAAAGATATCATAAACCAAATAAACCTCAACTTGGCTTATAATCCTGTGAGTCAAAGTAGGAAAAAAAAAAAAAAAGACAAGGATTCGACAAATGAGCATCAAGAAACATCTGCGGAAACCAAATCAAACAACATGCAAAGGGAGGCATATAAAAAGGGTCCAAAAAGAGCATACTTTTATTGGGTAACAAGGGAGCAAGCTTCCTTTGAATGGTTTAAGGGTGTCATGGATGACATTGCAGAATGTGATCACTATGTGAGTTTATTCAAATTAAAAGTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04624 map04013 map04624
Pfam Domains
Protein Families
EF-hand_6 FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

277

Amino Acids

31.97

Weight (kDa)

9.64

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_8 PF08022 41 - 156 1.3e-11 FAD-binding domain
NAD_binding_6 PF08030 163 - 265 7.4e-14 Ferric reductase NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
Acc16I TGCGCA 1 cut(s) 503
AciI CCGC 1 cut(s) 659
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 251, 289
AdeI CACNNNGTG 1 cut(s) 802
AfaI GTAC 2 cut(s) 28, 352
AfiI CCNNNNNNNGG 2 cut(s) 577, 756
AflII CTTAAG 1 cut(s) 37
AgsI TTSAA 8 cut(s) 9, 64, 289, 319, 347, 402, 755, 814
AjnI CCWGG 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 4 cut(s) 207, 229, 343, 746
AluI AGCT 4 cut(s) 207, 229, 343, 746
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 207
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 1 cut(s) 336
ApoI RAATTY 2 cut(s) 251, 289
ArsI GACNNNNNNTTYG 1 cut(s) 807
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 452, 704
AsuHPI GGTGA 1 cut(s) 148
AsuII TTCGAA 1 cut(s) 243
AvaII GGWCC 2 cut(s) 452, 704
BaeGI GKGCMC 2 cut(s) 46, 466
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 348
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 1 cut(s) 793
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 37
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 2 cut(s) 452, 704
BmgT120I GGNCC 2 cut(s) 452, 704
BmiI GGNNCC 2 cut(s) 453, 705
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 157, 549, 652
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 577, 756
Bse118I RCCGGY 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 148, 781
BseLI CCNNNNNNNGG 2 cut(s) 577, 756
BseMI GCAATG 1 cut(s) 780
BseNI ACTGG 1 cut(s) 221
BseSI GKGCMC 2 cut(s) 46, 466
BseXI GCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 355
BshVI ATCGAT 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 577, 756
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 46, 466
Bsp143I GATC 4 cut(s) 96, 437, 441, 793
BspACI CCGC 1 cut(s) 659
BspDI ATCGAT 1 cut(s) 440
BspHI TCATGA 2 cut(s) 93, 412
BspLI GGNNCC 2 cut(s) 453, 705
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 780
BsrFI RCCGGY 1 cut(s) 466
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 4 cut(s) 96, 437, 441, 793
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 410
BstAFI CTTAAG 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 330, 334, 341, 744
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 148, 781
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 4 cut(s) 99, 440, 444, 796
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 4 cut(s) 96, 437, 441, 793
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 142
BstSLI GKGCMC 2 cut(s) 46, 466
BstV1I GCAGC 1 cut(s) 348
Bsu15I ATCGAT 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 440
BtsCI GGATG 2 cut(s) 148, 781
Cac8I GCNNGC 4 cut(s) 330, 334, 341, 744
CciI TCATGA 2 cut(s) 93, 412
CfoI GCGC 1 cut(s) 504
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 452, 704
ClaI ATCGAT 1 cut(s) 440
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 27, 351
CviAII CATG 4 cut(s) 94, 413, 679, 772
CviJI RGCY 7 cut(s) 207, 229, 339, 343, 470, 581, 746
CviKI_1 RGCY 7 cut(s) 207, 229, 339, 343, 470, 581, 746
CviQI GTAC 2 cut(s) 27, 351
DdeI CTNAG 1 cut(s) 230
DpnI GATC 4 cut(s) 98, 439, 443, 795
DpnII GATC 4 cut(s) 96, 437, 441, 793
DraI TTTAAA 1 cut(s) 277
DraIII CACNNNGTG 1 cut(s) 802
Eco32I GATATC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 452, 704
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 553
FaeI CATG 4 cut(s) 97, 416, 682, 775
FaqI GGGAC 1 cut(s) 465
FatI CATG 4 cut(s) 93, 412, 678, 771
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 2 cut(s) 135, 788
Fsp4HI GCNGC 1 cut(s) 337
FspBI CTAG 1 cut(s) 360
FspI TGCGCA 1 cut(s) 503
GlaI GCGC 1 cut(s) 503
GluI GCNGC 1 cut(s) 337
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 504
Hin1II CATG 4 cut(s) 97, 416, 682, 775
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HindIII AAGCTT 2 cut(s) 205, 744
HinfI GANTC 4 cut(s) 5, 240, 595, 629
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 4 cut(s) 139, 196, 353, 464
Hpy188I TCNGA 3 cut(s) 101, 434, 827
Hpy188III TCNNGA 4 cut(s) 94, 286, 413, 647
Hpy8I GTNNAC 4 cut(s) 139, 196, 353, 464
HpyAV CCTTC 3 cut(s) 163, 416, 541
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 6 cut(s) 308, 328, 336, 464, 682, 785
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 4 cut(s) 97, 416, 682, 775
HspAI GCGC 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 4 cut(s) 96, 437, 441, 793
LmnI GCTCC 3 cut(s) 226, 521, 739
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 3 cut(s) 157, 549, 652
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 68, 730
MalI GATC 4 cut(s) 98, 439, 443, 795
MboI GATC 4 cut(s) 96, 437, 441, 793
MboII GAAGA 2 cut(s) 307, 447
MhlI GDGCHC 2 cut(s) 46, 466
MluCI AATT 7 cut(s) 76, 123, 251, 289, 475, 516, 815
MlyI GAGTC 1 cut(s) 604
MnlI CCTC 3 cut(s) 40, 581, 682
MseI TTAA 6 cut(s) 38, 126, 276, 296, 762, 818
MspCI CTTAAG 1 cut(s) 37
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
NdeI CATATG 1 cut(s) 457
NdeII GATC 4 cut(s) 96, 437, 441, 793
NlaIII CATG 4 cut(s) 97, 416, 682, 775
NlaIV GGNNCC 2 cut(s) 453, 705
NsbI TGCGCA 1 cut(s) 503
NspI RCATGY 1 cut(s) 682
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 2 cut(s) 93, 412
PfeI GAWTC 3 cut(s) 5, 240, 629
PkrI GCNGC 1 cut(s) 338
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PsiI TTATAA 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 453, 705
PspPI GGNCC 2 cut(s) 452, 704
RsaI GTAC 2 cut(s) 28, 352
RsaNI GTAC 2 cut(s) 27, 351
SaqAI TTAA 6 cut(s) 38, 126, 276, 296, 762, 818
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 4 cut(s) 96, 437, 441, 793
Sau96I GGNCC 2 cut(s) 452, 704
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 46, 466
SetI ASST 8 cut(s) 32, 60, 209, 231, 345, 511, 573, 748
SfaNI GCATC 3 cut(s) 157, 549, 652
SfcI CTRYAG 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 2 cut(s) 452, 704
SmlI CTYRAG 2 cut(s) 37, 187
SmoI CTYRAG 2 cut(s) 37, 187
Sse9I AATT 7 cut(s) 76, 123, 251, 289, 475, 516, 815
SsiI CCGC 1 cut(s) 659
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 3 cut(s) 243, 440, 632
TasI AATT 7 cut(s) 76, 123, 251, 289, 475, 516, 815
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 3 cut(s) 5, 240, 629
Tru1I TTAA 6 cut(s) 38, 126, 276, 296, 762, 818
Tru9I TTAA 6 cut(s) 38, 126, 276, 296, 762, 818
TseI GCWGC 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 429
TspGWI ACGGA 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 37
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 452, 704
XapI RAATTY 2 cut(s) 251, 289
XceI RCATGY 1 cut(s) 682
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.