pycom11g10160
BHLH Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
8515904 .. 8520050
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10160.3

Sequence Viewer

Length: 903 bp
ATGAATTTTCTGCATTGGAGATATTTTTATAAAGTGAACCACTCTGGCGTTGCCACGTGCTCACTCCCTCACACTCTCTCAGCTTTCTTTCCCTTTCTCTTCCTCCCGTCTCTCTCACTTTCTCGAAACCCTCTTTCTCTTTTGGACCATCTCACTTTTTATGCGTTGGAGATATTTTTACAAAGTGGACCACTATGGCATTGCCATGTGACACCGCCATACCTCATCACTAACTCTCTCTCCCCCGGATCTCACTCTCTCACACTCTCTCAACTTTCTTTCCTTTTCTCTTCTTCCCGTCTATCTTACTTTCTCGAAACCTCTCTCTCTTTAGGACTCTCTTTCTTGGCGATACTTACACCCAGATGCTTCCACCGTGACACCTCGACAATGGAACTGCGTCATCGCTACCTCCGTGAACTCTCATCCACATTTCTTAGTCTCGGTGCAACCCAGAATGCCCCGAGAAATGATCCTGGCGAGTGTCAAGGCTCTCAACCCAAAATCAGGCCAGCTACGGCTATTCCACGACAAACCACAGGTGCAATTATTATTGGAGATTCCGGCTTCCTAACTCAAATTAATGTGGCTTCGCAAGTACTTATAAAAACATTCTGGAATGTGCATTTTTTTTCCGGAGGATTTGTTTGGCTTGCAGGGGATCATGAGTTTCAATTGTACGAGTGTGAGAGAGTGAAAGAAGCAAGAATGAATGGAATCCAAACTTTGGTTTGTATTCCAACTTTGAGTGGGGTGCTTGAACTGGCTTTGGATGTTCGATCCAGCAAGATTGGGGTCTTGTGCACCTCACAAAGTCACTATTCCGTTCTGACGACGACGACCACAACAGGTTCTCAAACCAGCAGGCCACCCGTGAGGCCAATGTATTGGTTCCTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
HLH bHLH-MYC_N

Protein Analysis

301

Amino Acids

33.62

Weight (kDa)

8.88

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 30, 605
AccB7I CCANNNNNTGG 1 cut(s) 727
AccIII TCCGGA 1 cut(s) 635
AciI CCGC 1 cut(s) 215
AclWI GGATC 4 cut(s) 256, 467, 669, 774
AcsI RAATTY 1 cut(s) 4
AcvI CACGTG 1 cut(s) 57
AfaI GTAC 2 cut(s) 600, 680
AfiI CCNNNNNNNGG 2 cut(s) 507, 727
AgsI TTSAA 2 cut(s) 674, 761
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 2 cut(s) 83, 515
AluI AGCT 2 cut(s) 83, 515
Alw21I GWGCWC 2 cut(s) 62, 806
Alw26I GTCTC 2 cut(s) 114, 446
Alw44I GTGCAC 1 cut(s) 802
AlwI GGATC 4 cut(s) 256, 467, 669, 774
Ama87I CYCGRG 1 cut(s) 463
Aor13HI TCCGGA 1 cut(s) 635
AoxI GGCC 3 cut(s) 509, 866, 878
ApaLI GTGCAC 1 cut(s) 802
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 145, 188
AsuC2I CCSGG 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 463
AvaII GGWCC 2 cut(s) 145, 188
BaeGI GKGCMC 1 cut(s) 806
BbrPI CACGTG 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 62, 806
BccI CCATC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 534
BciT130I CCWGG 1 cut(s) 477
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 114, 446
BmcAI AGTACT 1 cut(s) 600
Bme1390I CCNGG 2 cut(s) 246, 477
Bme18I GGWCC 2 cut(s) 145, 188
BmeT110I CYCGRG 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 145, 188
BmiI GGNNCC 1 cut(s) 893
BmrFI CCNGG 2 cut(s) 246, 477
BmsI GCATC 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 507, 727
Bse1I ACTGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 635
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 425, 778
BseLI CCNNNNNNNGG 2 cut(s) 507, 727
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 768
BseSI GKGCMC 1 cut(s) 806
BshFI GGCC 3 cut(s) 511, 868, 880
BsiHKAI GWGCWC 2 cut(s) 62, 806
BsiHKCI CYCGRG 1 cut(s) 463
BsiSI CCGG 3 cut(s) 246, 564, 636
BslI CCNNNNNNNGG 2 cut(s) 507, 727
BsmAI GTCTC 2 cut(s) 114, 446
BsmBI CGTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 3 cut(s) 511, 868, 880
BsoBI CYCGRG 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 62, 806
Bsp13I TCCGGA 1 cut(s) 635
Bsp143I GATC 4 cut(s) 248, 472, 661, 779
BspACI CCGC 1 cut(s) 215
BspANI GGCC 3 cut(s) 511, 868, 880
BspCNI CTCAG 1 cut(s) 92
BspEI TCCGGA 1 cut(s) 635
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 893
BspPI GGATC 4 cut(s) 256, 467, 669, 774
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 768
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 4 cut(s) 248, 472, 661, 779
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 104, 295
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 513, 654, 866
BstDEI CTNAG 2 cut(s) 79, 437
BstF5I GGATG 2 cut(s) 425, 778
BstKTI GATC 4 cut(s) 251, 475, 664, 782
BstMAI GTCTC 2 cut(s) 114, 446
BstMBI GATC 4 cut(s) 248, 472, 661, 779
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 2 cut(s) 244, 475
BstSLI GKGCMC 1 cut(s) 806
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 888
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 3 cut(s) 511, 868, 880
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 2 cut(s) 425, 778
Cac8I GCNNGC 3 cut(s) 513, 654, 866
CciI TCATGA 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 145, 188
CseI GACGC 1 cut(s) 389
Csp6I GTAC 2 cut(s) 599, 679
CviAII CATG 2 cut(s) 206, 665
CviQI GTAC 2 cut(s) 599, 679
DdeI CTNAG 2 cut(s) 79, 437
DpnI GATC 4 cut(s) 250, 474, 663, 781
DpnII GATC 4 cut(s) 248, 472, 661, 779
Eam1104I CTCTTC 2 cut(s) 104, 295
EarI CTCTTC 2 cut(s) 104, 295
Eco47I GGWCC 2 cut(s) 145, 188
Eco72I CACGTG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 2 cut(s) 209, 668
FaiI YATR 7 cut(s) 30, 162, 196, 207, 220, 605, 666
FatI CATG 2 cut(s) 205, 664
FokI GGATG 2 cut(s) 412, 785
HaeIII GGCC 3 cut(s) 511, 868, 880
HapII CCGG 3 cut(s) 246, 564, 636
HgaI GACGC 1 cut(s) 389
Hin1II CATG 2 cut(s) 209, 668
HinfI GANTC 3 cut(s) 336, 560, 717
HpaII CCGG 3 cut(s) 246, 564, 636
Hpy166II GTNNAC 4 cut(s) 37, 188, 419, 804
Hpy188I TCNGA 1 cut(s) 831
Hpy188III TCNNGA 5 cut(s) 123, 314, 616, 636, 665
Hpy8I GTNNAC 4 cut(s) 37, 188, 419, 804
Hpy99I CGWCG 2 cut(s) 838, 841
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 6 cut(s) 13, 449, 545, 625, 656, 804
HpyF3I CTNAG 2 cut(s) 79, 437
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 2 cut(s) 209, 668
Kpn2I TCCGGA 1 cut(s) 635
Kzo9I GATC 4 cut(s) 248, 472, 661, 779
LweI GCATC 1 cut(s) 356
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 3 cut(s) 208, 377, 815
MalI GATC 4 cut(s) 250, 474, 663, 781
MboI GATC 4 cut(s) 248, 472, 661, 779
MboII GAAGA 3 cut(s) 91, 282, 285
MfeI CAATTG 1 cut(s) 674
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 62, 806
MluCI AATT 4 cut(s) 4, 546, 579, 674
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 147, 764
MroI TCCGGA 1 cut(s) 635
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 2 cut(s) 204, 364
MspI CCGG 3 cut(s) 246, 564, 636
MspR9I CCNGG 2 cut(s) 246, 477
MunI CAATTG 1 cut(s) 674
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 477
NciI CCSGG 1 cut(s) 246
NdeII GATC 4 cut(s) 248, 472, 661, 779
NlaIII CATG 2 cut(s) 209, 668
NlaIV GGNNCC 1 cut(s) 893
NmuCI GTSAC 3 cut(s) 208, 377, 815
PagI TCATGA 1 cut(s) 664
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 560, 717
PflMI CCANNNNNTGG 1 cut(s) 727
PleI GAGTC 1 cut(s) 330
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
PpsI GAGTC 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 582
PsiI TTATAA 2 cut(s) 30, 605
Psp6I CCWGG 1 cut(s) 475
PspCI CACGTG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 893
PspPI GGNCC 2 cut(s) 145, 188
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 2 cut(s) 600, 680
RsaNI GTAC 2 cut(s) 599, 679
RseI CAYNNNNRTG 2 cut(s) 204, 364
SaqAI TTAA 1 cut(s) 582
Sau3AI GATC 4 cut(s) 248, 472, 661, 779
Sau96I GGNCC 2 cut(s) 145, 188
ScaI AGTACT 1 cut(s) 600
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 2 cut(s) 246, 477
SduI GDGCHC 2 cut(s) 62, 806
SfaNI GCATC 1 cut(s) 356
SinI GGWCC 2 cut(s) 145, 188
SmiMI CAYNNNNRTG 2 cut(s) 204, 364
Sse9I AATT 4 cut(s) 4, 546, 579, 674
SsiI CCGC 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 244, 475
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 59
TaqI TCGA 4 cut(s) 124, 315, 386, 778
TasI AATT 4 cut(s) 4, 546, 579, 674
TatI WGTACW 1 cut(s) 598
TfiI GAWTC 2 cut(s) 560, 717
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TseFI GTSAC 3 cut(s) 208, 377, 815
Tsp45I GTSAC 3 cut(s) 208, 377, 815
TspDTI ATGAA 2 cut(s) 17, 725
TspGWI ACGGA 2 cut(s) 404, 814
Van91I CCANNNNNTGG 1 cut(s) 727
VneI GTGCAC 1 cut(s) 802
VpaK11BI GGWCC 2 cut(s) 145, 188
VspI ATTAAT 1 cut(s) 582
XapI RAATTY 1 cut(s) 4
ZrmI AGTACT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.