Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8794159 .. 8795472

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAACGGCATAATTCTCTTGACCTTAACCGCGACACTTAATTCGTTGAAGCCTCAACCTTGTGCTATCGGATCCGAATTATGCCATCCCACCTCGACATTGCAGTATGCAATCCCGTATGCGGGTATAGCTCTATCATCTATCGGGTTGGGAGGTACCCGCTTTACCTTGGCAACACTGGGTGCTAATCAATTTGACAGACCTAAGGACCAAGCAACTTTCTTTAATTGGTGCTTCGTTTCTATATACTCTGCTTCAATAGTAGGCCTAACAGTCATTATCTATCTTGAGGACAATGTGGGTTATAGATGGGGATTTGGCCTAGCTGTCATCACCAACCTAATTGCCACAGCCATTTTCTTGTCTGGAACCTGTTTCTATAAATATGATAAGCCACAAGGGAGTCCATTTGCGGGTTTAGCTCGTGTTATTGTTGCTGCTACGTGGAAAAGGAATCTCCAGATCTCTTCTGAAAGCAAAGATTTTTACTATGGGAATGGAGTAACGGGCGTGGAGGCTGCAGCATCTAGCAGGAGTTTGAGGTACAAACATTATAGGACATACAATTTTGATGCCTTATTTTTTCTATGTAGGTTTCTTAACCGTGCAGCACAGAAAACTGAAGGAGACATCAGATCAGATGGTTCAATTGCAAAACCATGGAGACTGAGCACAATGCAACAGGTGGAAGATTTCAAGACGATTATAAGAATATTTCCAATGTGGTCAACAGGCATATTATTAGGTACCCCGTTAGCAATTCAATCCTGCAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

260

Amino Acids

28.61

Weight (kDa)

9.33

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	3 - 247	5.4e-30	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
Acc65I	GGTACC	2 cut(s)	155, 746
AccB1I	GGYRCC	2 cut(s)	155, 746
AccII	CGCG	1 cut(s)	32
AciI	CCGC	4 cut(s)	30, 122, 160, 413
AclWI	GGATC	2 cut(s)	66, 79
AcuI	CTGAAG	1 cut(s)	642
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	3 cut(s)	157, 545, 748
AfiI	CCNNNNNNNGG	3 cut(s)	121, 122, 413
AgsI	TTSAA	5 cut(s)	49, 258, 648, 697, 764
AluBI	AGCT	3 cut(s)	131, 326, 422
AluI	AGCT	3 cut(s)	131, 326, 422
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	2 cut(s)	621, 658
AlwI	GGATC	2 cut(s)	66, 79
AoxI	GGCC	2 cut(s)	265, 319
ApeKI	GCWGC	4 cut(s)	437, 518, 521, 608
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
Asp718I	GGTACC	2 cut(s)	155, 746
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	71
BanI	GGYRCC	2 cut(s)	155, 746
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	4 cut(s)	424, 505, 533, 620
BccI	CCATC	3 cut(s)	93, 303, 635
BceAI	ACGGC	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	621, 658
BfaI	CTAG	2 cut(s)	323, 528
BfmI	CTRYAG	2 cut(s)	519, 769
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	4 cut(s)	438, 519, 522, 609
BlsI	GCNGC	4 cut(s)	439, 520, 523, 610
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	4 cut(s)	73, 157, 370, 748
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	533, 562
BmuI	ACTGGG	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	168, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 122, 413
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	168, 659
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	3 cut(s)	121, 122, 413
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	424, 505, 533, 620
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	267, 321
BshNI	GGYRCC	2 cut(s)	155, 746
BsiHKAI	GWGCWC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	121, 122, 413
BsmAI	GTCTC	2 cut(s)	621, 658
BsnI	GGCC	2 cut(s)	267, 321
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	3 cut(s)	71, 462, 635
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	4 cut(s)	30, 122, 160, 413
BspANI	GGCC	2 cut(s)	267, 321
BspCNI	CTCAG	1 cut(s)	660
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	73, 157, 370, 748
BspMAI	CTGCAG	2 cut(s)	523, 773
BspPI	GGATC	2 cut(s)	66, 79
BspT107I	GGYRCC	2 cut(s)	155, 746
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	168, 659
BssMI	GATC	3 cut(s)	71, 462, 635
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	168, 659
Bst2BI	CACGAG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	274, 605
Bst6I	CTCTTC	1 cut(s)	472
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	773
BstDEI	CTNAG	2 cut(s)	204, 668
BstDSI	CCRYGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	3 cut(s)	74, 465, 638
BstMAI	GTCTC	2 cut(s)	621, 658
BstMBI	GATC	3 cut(s)	71, 462, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 419
BstSFI	CTRYAG	2 cut(s)	519, 769
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	424, 505, 533, 620
BstX2I	RGATCY	2 cut(s)	71, 462
BstYI	RGATCY	2 cut(s)	71, 462
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	267, 321
BtgI	CCRYGG	1 cut(s)	659
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	156, 544, 747
CviAII	CATG	1 cut(s)	660
CviQI	GTAC	3 cut(s)	156, 544, 747
DdeI	CTNAG	2 cut(s)	204, 668
DpnI	GATC	3 cut(s)	73, 464, 637
DpnII	GATC	3 cut(s)	71, 462, 635
DraIII	CACNNNGTG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	168, 659
Eco147I	AGGCCT	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	168, 659
ErhI	CCWWGG	2 cut(s)	168, 659
FaeI	CATG	1 cut(s)	663
FatI	CATG	1 cut(s)	659
FauI	CCCGC	3 cut(s)	115, 167, 406
Fnu4HI	GCNGC	4 cut(s)	438, 519, 522, 609
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	438, 519, 522, 609
FspBI	CTAG	2 cut(s)	323, 528
GluI	GCNGC	4 cut(s)	438, 519, 522, 609
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	267, 321
Hin1II	CATG	1 cut(s)	663
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HinfI	GANTC	2 cut(s)	403, 454
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	729
Hpy188I	TCNGA	5 cut(s)	71, 76, 472, 635, 640
Hpy188III	TCNNGA	5 cut(s)	19, 287, 366, 460, 697
Hpy8I	GTNNAC	1 cut(s)	729
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	274, 605
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	7 cut(s)	103, 110, 521, 608, 653, 679, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 419
HpyF3I	CTNAG	2 cut(s)	204, 668
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	663
KpnI	GGTACC	2 cut(s)	159, 750
Kzo9I	GATC	3 cut(s)	71, 462, 635
LpnPI	CCDG	8 cut(s)	164, 351, 385, 473, 517, 668, 717, 757
Lsp1109I	GCAGC	4 cut(s)	424, 505, 533, 620
LweI	GCATC	2 cut(s)	533, 562
MaeI	CTAG	2 cut(s)	323, 528
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	73, 464, 637
MboI	GATC	3 cut(s)	71, 462, 635
MboII	GAAGA	2 cut(s)	459, 701
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	2 cut(s)	71, 462
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	9 cut(s)	12, 40, 77, 191, 226, 342, 565, 648, 759
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	63, 103, 146, 283, 508, 534
MseI	TTAA	4 cut(s)	26, 39, 225, 600
MunI	CAATTG	1 cut(s)	648
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	128, 419
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	3 cut(s)	71, 462, 635
NlaIII	CATG	1 cut(s)	663
NlaIV	GGNNCC	4 cut(s)	73, 157, 370, 748
PceI	AGGCCT	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	4 cut(s)	439, 520, 523, 610
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Ppu21I	YACGTR	1 cut(s)	444
PsiI	TTATAA	1 cut(s)	707
PspN4I	GGNNCC	4 cut(s)	73, 157, 370, 748
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	2 cut(s)	523, 773
PsuI	RGATCY	2 cut(s)	71, 462
RsaI	GTAC	3 cut(s)	157, 545, 748
RsaNI	GTAC	3 cut(s)	156, 544, 747
SaqAI	TTAA	4 cut(s)	26, 39, 225, 600
SatI	GCNGC	4 cut(s)	438, 519, 522, 609
Sau3AI	GATC	3 cut(s)	71, 462, 635
Sau96I	GGNCC	1 cut(s)	208
SbfI	CCTGCAGG	1 cut(s)	773
SchI	GAGTC	1 cut(s)	412
SdaI	CCTGCAGG	1 cut(s)	773
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	2 cut(s)	533, 562
SfcI	CTRYAG	2 cut(s)	519, 769
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse8387I	CCTGCAGG	1 cut(s)	773
Sse9I	AATT	9 cut(s)	12, 40, 77, 191, 226, 342, 565, 648, 759
SseBI	AGGCCT	1 cut(s)	267
SsiI	CCGC	4 cut(s)	30, 122, 160, 413
SspI	AATATT	1 cut(s)	714
SspMI	CTAG	2 cut(s)	323, 528
StuI	AGGCCT	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	168, 659
TaaI	ACNGT	2 cut(s)	274, 605
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	95
TasI	AATT	9 cut(s)	12, 40, 77, 191, 226, 342, 565, 648, 759
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	4 cut(s)	26, 39, 225, 600
Tru9I	TTAA	4 cut(s)	26, 39, 225, 600
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	4 cut(s)	437, 518, 521, 608
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	208
XspI	CTAG	2 cut(s)	323, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.