Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9021697 .. 9023203

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCGTGTGGGCATGAGTTTTGTTATAATTGTGGAGGCGAGTGGAAAGACAAAAAGGCAACATGCTCATGCCCACTATGGGATGAGGGTAATATTTTGTATGATGAAGATGATGAAGATTTTTATTTTGATGAAGAGGATGTGTTAGAGTCAGATTCCGAGAGACATGCTCCTTGGTTTTGCTATGACTGTGGACAGTCTACGGACTACATGGGAGCATGTTTATGCCCAGTTTTGTTTGAAGATGATATCTTGTTTGGTGGAGATAGTGATACTCAGGAGTTGAAAAAAGATGAATATGAAGGTGAAGTTGAGGATGAAAGCCTAGAAGAAGACGGATATGAAGATGAAAGTGGGCAGGAGGTTCAGGAAGAGAAGCATATCTTGCCTGCTGAAGATGGTAGAGATCTTGATGAAGAATATGAGGAAGATGAGGAGTTCTGTGACTCTGACTGCGAATGCTATGAAGATGAGGTTCATGAGAAAGAGGTTCGAGCGGACGTTCAGGATGAATGGTTGGAGCAAGGTCAGGAAGATGAGAACTTCTATGCGGAAAATGATACAGATTTTGGTGATGAATATGAGGAAGATGAAGAGGAGTACTGGGACTCTGACAACGAATATGAAAAGGAAGGATTTGAAAATGAAAGCGGGGAGGAGGAGGTTCAGGAAGAGAATAATATCTTGCCTGCTGAAGATGGTGGAGTTCTTGATGAAGAATATGTGGAAGATGAGGAGTTCTGTGACTCTGACTGCGAATGCTATGAAGATGAAGTTCATGAGAAAGAGGTTCGAGAGGACGTTCAGGATGAATGGTTGGAGCAAGGTCAGGAAGATGGGAACTTTTATGCGGAAAATGATACAGATTTTGGTGACGAATATGAGGAAGATGAAGAGTACTTTGACTTTGGCTGCGATCGCGACAGTGACTGTTACGACTCTAACTCAGATTATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

320

Amino Acids

37.67

Weight (kDa)

4.05

Isoelectric Point (pI)

75.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	1 cut(s)	921
AciI	CCGC	4 cut(s)	497, 551, 651, 851
AcuI	CTGAAG	2 cut(s)	414, 714
AfaI	GTAC	2 cut(s)	602, 899
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	242, 286, 641
Alw26I	GTCTC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	930
ApeKI	GCWGC	1 cut(s)	912
AsiSI	GCGATCGC	1 cut(s)	919
AsuHPI	GGTGA	3 cut(s)	317, 584, 884
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	899
BccI	CCATC	3 cut(s)	392, 692, 830
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	1 cut(s)	913
BlsI	GCNGC	1 cut(s)	914
BmcAI	AGTACT	2 cut(s)	602, 899
BmrI	ACTGGG	2 cut(s)	224, 613
BmuI	ACTGGG	2 cut(s)	224, 613
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	230, 608
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	5 cut(s)	88, 145, 322, 514, 814
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	290, 960
BseNI	ACTGG	2 cut(s)	230, 608
BseRI	GAGGAG	5 cut(s)	449, 611, 671, 674, 749
BseXI	GCAGC	1 cut(s)	899
Bsh1236I	CGCG	1 cut(s)	921
Bsh1285I	CGRYCG	1 cut(s)	919
BsiEI	CGRYCG	1 cut(s)	919
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	2 cut(s)	464, 764
Bsp143I	GATC	2 cut(s)	406, 916
Bsp68I	TCGCGA	1 cut(s)	921
BspACI	CCGC	4 cut(s)	497, 551, 651, 851
BspCNI	CTCAG	2 cut(s)	289, 959
BspFNI	CGCG	1 cut(s)	921
BspHI	TCATGA	2 cut(s)	478, 778
BsrBI	CCGCTC	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	230, 608
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	406, 916
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	4 cut(s)	191, 198, 926, 932
Bst6I	CTCTTC	5 cut(s)	129, 366, 588, 666, 888
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	390, 690
BstDEI	CTNAG	2 cut(s)	276, 946
BstF5I	GGATG	5 cut(s)	88, 145, 322, 514, 814
BstFNI	CGCG	1 cut(s)	921
BstKTI	GATC	2 cut(s)	409, 919
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	406, 916
BstMCI	CGRYCG	1 cut(s)	919
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 918
BstNSI	RCATGY	3 cut(s)	66, 170, 222
BstUI	CGCG	1 cut(s)	921
BstV1I	GCAGC	1 cut(s)	899
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtsCI	GGATG	5 cut(s)	88, 145, 322, 514, 814
BtsIMutI	CAGTG	1 cut(s)	931
BtuMI	TCGCGA	1 cut(s)	921
Cac8I	GCNNGC	2 cut(s)	390, 690
CaiI	CAGNNNCTG	1 cut(s)	930
CciI	TCATGA	2 cut(s)	478, 778
Csp6I	GTAC	2 cut(s)	601, 898
CviAII	CATG	8 cut(s)	14, 63, 69, 167, 211, 219, 479, 779
CviJI	RGCY	2 cut(s)	324, 912
CviKI_1	RGCY	2 cut(s)	324, 912
CviQI	GTAC	2 cut(s)	601, 898
DdeI	CTNAG	2 cut(s)	276, 946
DpnI	GATC	2 cut(s)	408, 918
DpnII	GATC	2 cut(s)	406, 916
Eam1104I	CTCTTC	5 cut(s)	129, 366, 588, 666, 888
EarI	CTCTTC	5 cut(s)	129, 366, 588, 666, 888
Eco130I	CCWWGG	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	414, 714
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	8 cut(s)	17, 66, 72, 170, 214, 222, 482, 782
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	8 cut(s)	13, 62, 68, 166, 210, 218, 478, 778
FauI	CCCGC	1 cut(s)	644
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	913
FokI	GGATG	5 cut(s)	95, 152, 329, 521, 821
Fsp4HI	GCNGC	1 cut(s)	913
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	1 cut(s)	913
Hin1II	CATG	8 cut(s)	17, 66, 72, 170, 214, 222, 482, 782
HinfI	GANTC	6 cut(s)	149, 155, 446, 608, 746, 938
HphI	GGTGA	3 cut(s)	317, 584, 884
Hpy166II	GTNNAC	2 cut(s)	194, 201
Hpy188I	TCNGA	6 cut(s)	154, 160, 451, 613, 751, 949
Hpy8I	GTNNAC	2 cut(s)	194, 201
HpyAV	CCTTC	2 cut(s)	296, 626
HpyCH4III	ACNGT	4 cut(s)	191, 198, 926, 932
HpyCH4IV	ACGT	2 cut(s)	501, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 918
HpyF3I	CTNAG	2 cut(s)	276, 946
HpySE526I	ACGT	2 cut(s)	501, 801
Hsp92II	CATG	8 cut(s)	17, 66, 72, 170, 214, 222, 482, 782
Kzo9I	GATC	2 cut(s)	406, 916
LmnI	GCTCC	4 cut(s)	175, 215, 520, 820
Lsp1109I	GCAGC	1 cut(s)	899
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	501, 801
MaeIII	GTNAC	5 cut(s)	443, 743, 872, 926, 932
MalI	GATC	2 cut(s)	408, 918
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	2 cut(s)	406, 916
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	1 cut(s)	28
MlyI	GAGTC	5 cut(s)	158, 440, 602, 740, 932
MmeI	TCCRAC	2 cut(s)	498, 798
MslI	CAYNNNNRTG	2 cut(s)	67, 223
Mva1269I	GAATGC	2 cut(s)	464, 764
MvnI	CGCG	1 cut(s)	921
MwoI	GCNNNNNNNGC	2 cut(s)	385, 918
NdeII	GATC	2 cut(s)	406, 916
NlaIII	CATG	8 cut(s)	17, 66, 72, 170, 214, 222, 482, 782
NmuCI	GTSAC	4 cut(s)	443, 743, 872, 926
NruI	TCGCGA	1 cut(s)	921
NspI	RCATGY	3 cut(s)	66, 170, 222
PagI	TCATGA	2 cut(s)	478, 778
PctI	GAATGC	2 cut(s)	464, 764
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	914
Ple19I	CGATCG	1 cut(s)	919
PleI	GAGTC	5 cut(s)	157, 440, 602, 740, 932
PpsI	GAGTC	5 cut(s)	157, 440, 602, 740, 932
PsiI	TTATAA	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	930
PsuI	RGATCY	1 cut(s)	406
PvuI	CGATCG	1 cut(s)	919
RgaI	GCGATCGC	1 cut(s)	919
RruI	TCGCGA	1 cut(s)	921
RsaI	GTAC	2 cut(s)	602, 899
RsaNI	GTAC	2 cut(s)	601, 898
RseI	CAYNNNNRTG	2 cut(s)	67, 223
SatI	GCNGC	1 cut(s)	913
Sau3AI	GATC	2 cut(s)	406, 916
ScaI	AGTACT	2 cut(s)	602, 899
SchI	GAGTC	5 cut(s)	158, 440, 602, 740, 932
SfaAI	GCGATCGC	1 cut(s)	919
SgfI	GCGATCGC	1 cut(s)	919
SmiMI	CAYNNNNRTG	2 cut(s)	67, 223
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	4 cut(s)	497, 551, 651, 851
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	4 cut(s)	191, 198, 926, 932
TaiI	ACGT	2 cut(s)	504, 804
TaqI	TCGA	2 cut(s)	493, 793
TasI	AATT	1 cut(s)	28
TatI	WGTACW	2 cut(s)	600, 897
TfiI	GAWTC	1 cut(s)	155
TscAI	CASTG	1 cut(s)	931
TseFI	GTSAC	4 cut(s)	443, 743, 872, 926
TseI	GCWGC	1 cut(s)	912
Tsp45I	GTSAC	4 cut(s)	443, 743, 872, 926
TspGWI	ACGGA	2 cut(s)	218, 351
TspRI	CASTG	1 cut(s)	931
XceI	RCATGY	3 cut(s)	66, 170, 222
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	1 cut(s)	326
ZrmI	AGTACT	2 cut(s)	602, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.