Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

9034271 .. 9036086

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGACGACCTCGACACCATTCTCTCCGAGCAGAGAGCTCATGACGGCCAAAACCCTAGACTCCGACCTCGAAATGGCCTGCAAACTCCAAATGCAGGAAGCCATGACCACCTCTCTAGCCGTCAAACCCTCGTCGGCTTCGGCTTCGAGTCCGCACAACCTTCTGCCTCCGTCGCCGCCCCACGACGGCTCGAATGACGCCGTATTAGAATTGGCCGCCACTCTTATGCTCGAGGACGTCGAGCGGTTCGCTCAGGAGCACGAGGACCACGACCGCACCGTTAATGAGACGGCGGAGCTGGAGGCCATCGTTGAAGGGCTTGACAACGCTCTCGCTCTGGACTTGAAAGCTGTGACCTTTTTCTGTGATGACTACATGATTTACCAATATGTGATGACTACATGTTTTACCAATATTTTGAAGGAGACGTGTGTAATTTGCTTTGAAGAAACTGATGTTGCTAAAATGTTTTCAATCGATGGTTGTTTACACAAGCATTGCTTTTCCTGTATGAGACAACATGTGGAAGTAAAGTTTTTGAATGGGATGGTGGCAGTGTGCCCTCACGAAGGCTGTAAAACTGAGGTGAATATTGGCAGCTGCGCAAAATTCTTGACTCCTAAACTAGTCGAGGCTATAAGCCAAAGAATCAAGGAATCTGCTATTCCAGTTACGGACAAGGTTTTTTGCCCAAATCCCAGGTGTTCTGCATTAATGTCTAAAAAAAAGGTCTTAGACTATTCTGGAGCAAGGAGATGCATGAAATGTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

259

Amino Acids

28.64

Weight (kDa)

5.3

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
Acc16I	TGCGCA	1 cut(s)	607
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	6 cut(s)	155, 179, 219, 247, 277, 296
AcoI	YGGCCR	2 cut(s)	48, 216
AcsI	RAATTY	1 cut(s)	611
AcyI	GRCGYC	2 cut(s)	201, 240
AfiI	CCNNNNNNNGG	4 cut(s)	76, 97, 188, 572
AflIII	ACRYGT	3 cut(s)	404, 431, 523
AgsI	TTSAA	6 cut(s)	317, 349, 424, 449, 477, 544
AhlI	ACTAGT	1 cut(s)	628
AjiI	CACGTC	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	4 cut(s)	40, 301, 353, 603
AluI	AGCT	4 cut(s)	40, 301, 353, 603
Alw21I	GWGCWC	2 cut(s)	42, 264
Alw26I	GTCTC	3 cut(s)	284, 422, 511
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	48, 78, 216, 306
ApeKI	GCWGC	2 cut(s)	600, 603
ApoI	RAATTY	1 cut(s)	611
AseI	ATTAAT	1 cut(s)	716
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	42, 264
BbvI	GCAGC	2 cut(s)	590, 612
BccI	CCATC	3 cut(s)	317, 476, 544
BceAI	ACGGC	5 cut(s)	63, 107, 188, 205, 309
BciT130I	CCWGG	1 cut(s)	703
BcoDI	GTCTC	3 cut(s)	284, 422, 511
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	3 cut(s)	59, 119, 629
BisI	GCNGC	4 cut(s)	179, 219, 601, 604
BlsI	GCNGC	4 cut(s)	180, 220, 602, 605
Bme1390I	CCNGG	1 cut(s)	703
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	703
BmsI	GCATC	1 cut(s)	749
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	323, 768
Bpu10I	CCTNAGC	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	201, 240
BsaJI	CCNNGG	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 97, 188, 572
Bse1I	ACTGG	1 cut(s)	671
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	703
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	4 cut(s)	76, 97, 188, 572
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	269, 576
BseNI	ACTGG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	590, 612
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	4 cut(s)	50, 80, 218, 308
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	42, 264
BsiHKCI	CYCGRG	1 cut(s)	233
BslI	CCNNNNNNNGG	4 cut(s)	76, 97, 188, 572
BsmAI	GTCTC	3 cut(s)	284, 422, 511
BsmBI	CGTCTC	2 cut(s)	284, 422
BsnI	GGCC	4 cut(s)	50, 80, 218, 308
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	42, 264, 566
BspACI	CCGC	6 cut(s)	155, 179, 219, 247, 277, 296
BspANI	GGCC	4 cut(s)	50, 80, 218, 308
BspCNI	CTCAG	2 cut(s)	268, 577
BspDI	ATCGAT	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	671
BssECI	CCNNGG	1 cut(s)	701
BssNI	GRCGYC	2 cut(s)	201, 240
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	2 cut(s)	201, 240
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	255, 585, 736
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	608
BstMAI	GTCTC	3 cut(s)	284, 422, 511
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	2 cut(s)	408, 527
BstSCI	CCNGG	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	590, 612
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	50, 80, 218, 308
BsuTUI	ATCGAT	1 cut(s)	480
BtrI	CACGTC	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	82
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	1 cut(s)	209
CviAII	CATG	6 cut(s)	43, 106, 379, 405, 524, 763
DdeI	CTNAG	3 cut(s)	255, 585, 736
EaeI	YGGCCR	2 cut(s)	48, 216
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoRII	CCWGG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	764
EcoT38I	GRGCYC	1 cut(s)	42
Esp3I	CGTCTC	2 cut(s)	284, 422
FaeI	CATG	6 cut(s)	46, 109, 382, 408, 527, 766
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	6 cut(s)	42, 105, 378, 404, 523, 762
Fnu4HI	GCNGC	4 cut(s)	179, 219, 601, 604
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	4 cut(s)	179, 219, 601, 604
FspBI	CTAG	3 cut(s)	59, 119, 629
FspI	TGCGCA	1 cut(s)	607
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	4 cut(s)	179, 219, 601, 604
GsuI	CTGGAG	2 cut(s)	323, 768
HaeIII	GGCC	4 cut(s)	50, 80, 218, 308
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	2 cut(s)	201, 240
Hin1II	CATG	6 cut(s)	46, 109, 382, 408, 527, 766
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	5 cut(s)	62, 151, 619, 651, 659
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	30, 67
Hpy188III	TCNNGA	6 cut(s)	43, 257, 341, 569, 616, 747
Hpy8I	GTNNAC	1 cut(s)	491
Hpy99I	CGWCG	4 cut(s)	139, 178, 191, 245
HpyAV	CCTTC	4 cut(s)	173, 311, 418, 566
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	240, 431
HpyCH4V	TGCA	4 cut(s)	84, 97, 713, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	3 cut(s)	255, 585, 736
HpySE526I	ACGT	2 cut(s)	240, 431
Hsp92I	GRCGYC	2 cut(s)	201, 240
Hsp92II	CATG	6 cut(s)	46, 109, 382, 408, 527, 766
HspAI	GCGC	1 cut(s)	606
LmnI	GCTCC	3 cut(s)	259, 298, 749
Lsp1109I	GCAGC	2 cut(s)	590, 612
LweI	GCATC	1 cut(s)	749
MaeI	CTAG	3 cut(s)	59, 119, 629
MaeII	ACGT	2 cut(s)	240, 431
MaeIII	GTNAC	2 cut(s)	355, 673
MbiI	CCGCTC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	461
MhlI	GDGCHC	3 cut(s)	42, 264, 566
MluCI	AATT	3 cut(s)	212, 438, 611
MlyI	GAGTC	3 cut(s)	56, 160, 613
MmeI	TCCRAC	1 cut(s)	90
Mph1103I	ATGCAT	1 cut(s)	764
MseI	TTAA	2 cut(s)	285, 716
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	603
MspR9I	CCNGG	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	703
MwoI	GCNNNNNNNGC	1 cut(s)	175
NlaIII	CATG	6 cut(s)	46, 109, 382, 408, 527, 766
NmuCI	GTSAC	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	764
NspI	RCATGY	2 cut(s)	408, 527
PaeR7I	CTCGAG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	42
PciI	ACATGT	2 cut(s)	404, 523
PcsI	WCGNNNNNNNCGW	3 cut(s)	240, 270, 279
PfeI	GAWTC	2 cut(s)	651, 659
PkrI	GCNGC	4 cut(s)	180, 220, 602, 605
PleI	GAGTC	3 cut(s)	56, 159, 613
PpsI	GAGTC	3 cut(s)	56, 159, 613
PscI	ACATGT	2 cut(s)	404, 523
PshBI	ATTAAT	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	701
PspPI	GGNCC	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	603
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	285, 716
SatI	GCNGC	4 cut(s)	179, 219, 601, 604
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	3 cut(s)	56, 160, 613
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	3 cut(s)	42, 264, 566
SfaNI	GCATC	1 cut(s)	749
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	628
Sse9I	AATT	3 cut(s)	212, 438, 611
SsiI	CCGC	6 cut(s)	155, 179, 219, 247, 277, 296
SspI	AATATT	2 cut(s)	418, 595
SspMI	CTAG	3 cut(s)	59, 119, 629
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	701
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	2 cut(s)	243, 434
TaqI	TCGA	8 cut(s)	14, 72, 149, 194, 234, 243, 480, 633
TasI	AATT	3 cut(s)	212, 438, 611
TauI	GCSGC	2 cut(s)	181, 221
TfiI	GAWTC	2 cut(s)	651, 659
Tru1I	TTAA	2 cut(s)	285, 716
Tru9I	TTAA	2 cut(s)	285, 716
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	600, 603
Tsp45I	GTSAC	1 cut(s)	355
TspGWI	ACGGA	2 cut(s)	162, 692
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	716
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	2 cut(s)	408, 527
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	3 cut(s)	59, 119, 629
ZraI	GACGTC	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.