pycom11g10690

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
9104148 .. 9106656
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGAAGACGAACCAAGTTGCGATACAGGATGGCGATGAGGTGGAGGGCCGCACTGGCTTGGATAAGAGCTCGGGTTTTCCAAGCACATTGGGAACAAGTATGAGATGGGAGAAGAGGTTGGGCGTGGGCATTTTGGGTACACTTGCAAAGCTACGTTCAAGAAGGGTGACCTCAAGGGCCAGTAGGCCGCCGTCAAAGTCATCCCCAAAGCCAAGATGTCGATGA

Protein Analysis

75

Amino Acids

8.09

Weight (kDa)

11.45

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 188
AfaI GTAC 1 cut(s) 139
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 2 cut(s) 69, 151
AluI AGCT 2 cut(s) 69, 151
Alw21I GWGCWC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 3 cut(s) 46, 177, 185
AspS9I GGNCC 2 cut(s) 46, 177
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 70
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 2 cut(s) 23, 99
BceAI ACGGC 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 49, 188
BlsI GCNGC 2 cut(s) 50, 189
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 46, 177
BpiI GAAGAC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse1I ACTGG 2 cut(s) 58, 180
BseGI GGATG 2 cut(s) 34, 200
BseNI ACTGG 2 cut(s) 58, 180
BshFI GGCC 3 cut(s) 48, 179, 187
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 70
BsnI GGCC 3 cut(s) 48, 179, 187
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 71
BspACI CCGC 2 cut(s) 49, 188
BspANI GGCC 3 cut(s) 48, 179, 187
BsrI ACTGG 2 cut(s) 58, 180
Bst6I CTCTTC 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 166
BstF5I GGATG 2 cut(s) 34, 200
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 3 cut(s) 48, 179, 187
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 34, 200
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 46, 177
Csp6I GTAC 1 cut(s) 138
CviJI RGCY 7 cut(s) 48, 57, 69, 151, 179, 187, 211
CviKI_1 RGCY 7 cut(s) 48, 57, 69, 151, 179, 187, 211
CviQI GTAC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 69
EcoO65I GGTNACC 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 71
FaiI YATR 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 49, 188
FokI GGATG 2 cut(s) 41, 187
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 49, 188
GluI GCNGC 2 cut(s) 49, 188
HaeIII GGCC 3 cut(s) 48, 179, 187
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 140
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 154
LpnPI CCDG 3 cut(s) 11, 39, 193
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 2 cut(s) 16, 124
MhlI GDGCHC 1 cut(s) 71
MnlI CCTC 4 cut(s) 31, 37, 108, 181
MwoI GCNNNNNNNGC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 166
PkrI GCNGC 2 cut(s) 50, 189
Psp124BI GAGCTC 1 cut(s) 71
PspEI GGTNACC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 46, 177
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 2 cut(s) 49, 188
Sau96I GGNCC 2 cut(s) 46, 177
SduI GDGCHC 1 cut(s) 71
SetI ASST 6 cut(s) 42, 71, 119, 153, 157, 173
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SsiI CCGC 2 cut(s) 49, 188
SstI GAGCTC 1 cut(s) 71
TaiI ACGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 220
TauI GCSGC 2 cut(s) 51, 190
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.