pycom11g12200

histone H2B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
11103502 .. 11104283
782 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGAAATACGTTCCAGATTCGATTAAAATACAAATTATTTTCACCAAATCGCGCCTTAAAAGCCCCAAACCCTCTACCGCTCAAACAAAACCCGATCTCCACCGTCTATTCTATCCCCGAACATCCAATCGCTCCACGTCACTGATCCGCGCAGCACCAACACAACCAATCAAATCTCATCACCTTCCCCTATATATACAGAATCCCAAATCCAACCCATCTCATTCACTCACAACCTTCGTCTCAGATAGCTCTGTATTTTCCTCCTTTTCTACAAACCCTAGGTTTTTTTCCGAAAATCTGACACCAATGGCTCCCAAGGCAGAGAAGAAGCCGGCCGAGAAGAAGCCCGCGGAGGAGAAGAAGGCTGAGAAGGCCCCCGCTGAGAAAAAGCCCCGTGCCGAGAAGAATCTCCCCAAGGATGGCGCCGGCGAGAAGAAGAAGAAGAGATCGAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTCCACCCAGACATCGGAATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTTATCAATGACATCTTCGAGAAGCTCGCTCAGGAGTCGTCGCGGCTCGCGAGGTACAACAAGAAGCCGATCGATCACTTCACGGGAGATTCAGACGGCGGTGAGGTTGGTGCTCCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05203 ko05322 map05034 map05203 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

226

Amino Acids

25.31

Weight (kDa)

10.02

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 145 - 207 2e-13 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 80
AccII CGCG 5 cut(s) 52, 150, 353, 598, 605
AciI CCGC 7 cut(s) 78, 148, 351, 353, 381, 598, 654
AclWI GGATC 2 cut(s) 139, 551
AcoI YGGCCR 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 3 cut(s) 422, 502, 518
AgsI TTSAA 1 cut(s) 490
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 1 cut(s) 671
AluBI AGCT 3 cut(s) 252, 555, 580
AluI AGCT 3 cut(s) 252, 555, 580
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 247, 461
AlwI GGATC 2 cut(s) 139, 551
AoxI GGCC 3 cut(s) 336, 375, 534
ApeKI GCWGC 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 281
AspLEI GCGC 3 cut(s) 54, 152, 428
AspS9I GGNCC 3 cut(s) 376, 493, 505
AsuHPI GGTGA 3 cut(s) 34, 173, 668
AvaII GGWCC 2 cut(s) 493, 505
AvrII CCTAGG 1 cut(s) 281
BanI GGYRCC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 1 cut(s) 164
BccI CCATC 2 cut(s) 226, 416
BceAI ACGGC 1 cut(s) 667
BciT130I CCWGG 1 cut(s) 673
BcoDI GTCTC 2 cut(s) 247, 461
BfaI CTAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 493
BglII AGATCT 1 cut(s) 477
BisI GCNGC 2 cut(s) 153, 599
BlnI CCTAGG 1 cut(s) 281
BlsI GCNGC 2 cut(s) 154, 600
Bme1390I CCNGG 1 cut(s) 673
Bme18I GGWCC 2 cut(s) 493, 505
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 376, 493, 505
BmiI GGNNCC 3 cut(s) 315, 378, 427
BmrFI CCNGG 1 cut(s) 673
BpmI CTGGAG 1 cut(s) 511
Bpu10I CCTNAGC 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 627
BsaBI GATNNNNATC 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 6 cut(s) 281, 318, 351, 417, 537, 671
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 502, 518
Bse118I RCCGGY 2 cut(s) 334, 428
Bse8I GATNNNNATC 1 cut(s) 482
BseBI CCWGG 1 cut(s) 673
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 6 cut(s) 281, 318, 351, 417, 537, 671
BseGI GGATG 2 cut(s) 122, 427
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 3 cut(s) 422, 502, 518
BseMII CTCAG 4 cut(s) 258, 360, 375, 599
BseRI GAGGAG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 5 cut(s) 52, 150, 353, 598, 605
Bsh1285I CGRYCG 2 cut(s) 339, 627
BshFI GGCC 3 cut(s) 338, 377, 536
BshNI GGYRCC 1 cut(s) 425
BshVI ATCGAT 1 cut(s) 627
BsiEI CGRYCG 2 cut(s) 339, 627
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 335, 429
BslI CCNNNNNNNGG 3 cut(s) 422, 502, 518
BsmAI GTCTC 2 cut(s) 247, 461
BsmBI CGTCTC 1 cut(s) 247
BsnI GGCC 3 cut(s) 338, 377, 536
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
Bsp19I CCATGG 1 cut(s) 537
Bsp68I TCGCGA 1 cut(s) 605
BspACI CCGC 7 cut(s) 78, 148, 351, 353, 381, 598, 654
BspANI GGCC 3 cut(s) 338, 377, 536
BspCNI CTCAG 4 cut(s) 257, 361, 376, 598
BspDI ATCGAT 1 cut(s) 627
BspFNI CGCG 5 cut(s) 52, 150, 353, 598, 605
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 315, 378, 427
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 2 cut(s) 139, 551
BspQI GCTCTTC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 334, 428
BssAI RCCGGY 2 cut(s) 334, 428
BssECI CCNNGG 6 cut(s) 281, 318, 351, 417, 537, 671
BssMI GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 4 cut(s) 281, 318, 417, 537
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 440, 452
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 5 cut(s) 336, 351, 430, 582, 603
BstDEI CTNAG 4 cut(s) 244, 369, 384, 585
BstDSI CCRYGG 2 cut(s) 351, 537
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 2 cut(s) 122, 427
BstFNI CGCG 5 cut(s) 52, 150, 353, 598, 605
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 3 cut(s) 54, 152, 428
BstKTI GATC 7 cut(s) 97, 147, 452, 480, 546, 627, 631
BstMAI GTCTC 2 cut(s) 247, 461
BstMBI GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
BstMCI CGRYCG 2 cut(s) 339, 627
BstMWI GCNNNNNNNGC 3 cut(s) 60, 320, 374
BstNI CCWGG 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 671
BstUI CGCG 5 cut(s) 52, 150, 353, 598, 605
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BstZI CGGCCG 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 627
BsuRI GGCC 3 cut(s) 338, 377, 536
BsuTUI ATCGAT 1 cut(s) 627
BtgI CCRYGG 2 cut(s) 351, 537
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 122, 427
BtsIMutI CAGTG 1 cut(s) 140
BtuMI TCGCGA 1 cut(s) 605
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 5 cut(s) 336, 351, 430, 582, 603
CciI TCATGA 1 cut(s) 546
CfoI GCGC 3 cut(s) 54, 152, 428
Cfr10I RCCGGY 2 cut(s) 334, 428
Cfr13I GGNCC 3 cut(s) 376, 493, 505
Cfr42I CCGCGG 1 cut(s) 354
ClaI ATCGAT 1 cut(s) 627
Csp6I GTAC 1 cut(s) 610
CviAII CATG 2 cut(s) 538, 547
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 4 cut(s) 244, 369, 384, 585
DinI GGCGCC 1 cut(s) 427
DpnI GATC 7 cut(s) 96, 146, 451, 479, 545, 626, 630
DpnII GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
EaeI YGGCCR 1 cut(s) 336
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 440, 452
EarI CTCTTC 2 cut(s) 440, 452
EclXI CGGCCG 1 cut(s) 336
Eco130I CCWWGG 4 cut(s) 281, 318, 417, 537
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 493, 505
Eco52I CGGCCG 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoO109I RGGNCCY 2 cut(s) 376, 493
EcoRII CCWGG 1 cut(s) 671
EcoT14I CCWWGG 4 cut(s) 281, 318, 417, 537
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
ErhI CCWWGG 4 cut(s) 281, 318, 417, 537
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 2 cut(s) 541, 550
FaiI YATR 5 cut(s) 193, 195, 197, 539, 548
FatI CATG 2 cut(s) 537, 546
FauI CCCGC 2 cut(s) 358, 388
Fnu4HI GCNGC 2 cut(s) 153, 599
FokI GGATG 2 cut(s) 109, 434
Fsp4HI GCNGC 2 cut(s) 153, 599
FspBI CTAG 1 cut(s) 282
GlaI GCGC 3 cut(s) 53, 151, 427
GluI GCNGC 2 cut(s) 153, 599
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 3 cut(s) 338, 377, 536
HapII CCGG 2 cut(s) 335, 429
HhaI GCGC 3 cut(s) 54, 152, 428
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 2 cut(s) 541, 550
Hin6I GCGC 3 cut(s) 52, 150, 426
HinP1I GCGC 3 cut(s) 52, 150, 426
HinfI GANTC 6 cut(s) 17, 202, 409, 522, 590, 644
HpaII CCGG 2 cut(s) 335, 429
HphI GGTGA 3 cut(s) 34, 173, 668
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 5 cut(s) 247, 295, 303, 521, 649
Hpy188III TCNNGA 6 cut(s) 14, 496, 547, 574, 587, 604
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 4 cut(s) 194, 247, 358, 367
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 2 cut(s) 9, 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 320, 374
HpyF3I CTNAG 4 cut(s) 244, 369, 384, 585
HpySE526I ACGT 2 cut(s) 9, 137
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 2 cut(s) 541, 550
HspAI GCGC 3 cut(s) 52, 150, 426
KasI GGCGCC 1 cut(s) 425
KroI GCCGGC 2 cut(s) 334, 428
KroNI GCCGGC 2 cut(s) 336, 430
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 3 cut(s) 137, 319, 673
LpnPI CCDG 9 cut(s) 27, 348, 442, 488, 509, 525, 541, 572, 658
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 9, 137
MaeIII GTNAC 1 cut(s) 138
MalI GATC 7 cut(s) 96, 146, 451, 479, 545, 626, 630
MbiI CCGCTC 1 cut(s) 80
MboI GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 5 cut(s) 82, 274, 349, 600, 652
MreI CGCCGGCG 1 cut(s) 428
MroNI GCCGGC 2 cut(s) 334, 428
MseI TTAA 2 cut(s) 24, 57
MspA1I CMGCKG 2 cut(s) 353, 383
MspI CCGG 2 cut(s) 335, 429
MspR9I CCNGG 1 cut(s) 673
MvaI CCWGG 1 cut(s) 673
MvnI CGCG 5 cut(s) 52, 150, 353, 598, 605
MwoI GCNNNNNNNGC 3 cut(s) 60, 320, 374
NaeI GCCGGC 2 cut(s) 336, 430
NarI GGCGCC 1 cut(s) 426
NcoI CCATGG 1 cut(s) 537
NdeII GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
NgoMIV GCCGGC 2 cut(s) 334, 428
NlaIII CATG 2 cut(s) 541, 550
NlaIV GGNNCC 3 cut(s) 315, 378, 427
NmeAIII GCCGAG 2 cut(s) 364, 427
NmuCI GTSAC 1 cut(s) 138
NruI TCGCGA 1 cut(s) 605
PagI TCATGA 1 cut(s) 546
PciSI GCTCTTC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 602
PdiI GCCGGC 2 cut(s) 336, 430
PfeI GAWTC 5 cut(s) 17, 202, 409, 522, 644
PkrI GCNGC 2 cut(s) 154, 600
Ple19I CGATCG 1 cut(s) 627
PleI GAGTC 1 cut(s) 598
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 598
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 3 cut(s) 315, 378, 427
PspPI GGNCC 3 cut(s) 376, 493, 505
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 1 cut(s) 477
PvuI CGATCG 1 cut(s) 627
RruI TCGCGA 1 cut(s) 605
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
SacII CCGCGG 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 24, 57
SatI GCNGC 2 cut(s) 153, 599
Sau3AI GATC 7 cut(s) 94, 144, 449, 477, 543, 624, 628
Sau96I GGNCC 3 cut(s) 376, 493, 505
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 673
SduI GDGCHC 1 cut(s) 670
SfoI GGCGCC 1 cut(s) 427
Sfr303I CCGCGG 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 428
SgrBI CCGCGG 1 cut(s) 354
SinI GGWCC 2 cut(s) 493, 505
Sse9I AATT 1 cut(s) 33
SsiI CCGC 7 cut(s) 78, 148, 351, 353, 381, 598, 654
SspDI GGCGCC 1 cut(s) 425
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 671
StyI CCWWGG 4 cut(s) 281, 318, 417, 537
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 2 cut(s) 12, 140
TaqI TCGA 4 cut(s) 20, 452, 573, 627
TasI AATT 1 cut(s) 33
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 5 cut(s) 17, 202, 409, 522, 644
Tru1I TTAA 2 cut(s) 24, 57
Tru9I TTAA 2 cut(s) 24, 57
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 17, 563
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 493, 505
XagI CCTNNNNNAGG 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.