Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11406312 .. 11408620

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATAATATTATTATGTTTTTCGTGTCTTATAGATGTGGGGGTGTGGGGTGCATTTAGTGACTGTTTCATTTGGTGGCTACGCATATTGGTGTCAATTACCCCTGATGTTACAGTGAAAAGGGTGAAAAGGGATGTGATTAAGCAGCTCGTTGTTTTGTACAAAGAGTCACACTTGGGTCAAGGAACCCCAGCGTATGATGGTATGGAAAGCATTTACACCGCAGGTCCATTGCCTTTTGAATCCAAAGAATTTCAGGTCAATTTTTTTTTTTTATACCTACTTTTTATAAAAGTATCTCAGTACCAAACCAATACTTACACTGTTGTTGGGAGGTCTTTTTTCTCCACAACGCTTGGGCCAAAAGGTGAGCTTGGTGACGGTCTGGAATATTGGAGAGGATATTACCAGAGTCTTAGGCCAACCCAGTTTGGGCTTTCCCTCAATATAGGCATTAGGTTCACCCAATTTCCTTGTTTCGGAAACCATGCAAAGCCAAGTAACAAGAATGCTTTTCTGTCTTGTGATCTTTATGCTCATGCCTATTTTCAGTTTGAATCAGTACTTAATATACGAACTCTGAATATTAGGTTTACTCTAGAAGGCGGAAGTAGTAAGATGGCAGTTCAATATTATCGTGAAAGGTACAATGTTGTGCTAAAGAATGTGGCAATGCCTGCCATTCAATCAGGAAGTGCTTCCAAACCTGTTTATTTGCCTATGGAGGGAGTTTATTCTGATCGAGGTTCTCGTACAGGTCCTAAAGCCGGGGTTGCTGGTGGTGTGCGGTTCAGAGCCCTGCCCGAGATCAAACAAAATGCGGAGGATGTTATGTTCTACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

282

Amino Acids

31.82

Weight (kDa)

9.12

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	31 - 88	9e-10	N-terminal domain of argonaute
ArgoL1	PF08699	110 - 151	7.6e-15	Argonaute linker 1 domain
PAZ	PF02170	193 - 243	1.6e-07	PAZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	215
AciI	CCGC	4 cut(s)	222, 606, 787, 821
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	5 cut(s)	161, 305, 564, 647, 754
AfiI	CCNNNNNNNGG	4 cut(s)	432, 479, 725, 767
AgsI	TTSAA	4 cut(s)	242, 557, 629, 686
AloI	GAACNNNNNNTCC	1 cut(s)	818
AluBI	AGCT	2 cut(s)	148, 373
AluI	AGCT	2 cut(s)	148, 373
Ama87I	CYCGRG	1 cut(s)	803
AoxI	GGCC	2 cut(s)	359, 419
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	697
AspS9I	GGNCC	3 cut(s)	227, 359, 758
AsuC2I	CCSGG	1 cut(s)	769
AsuHPI	GGTGA	4 cut(s)	136, 380, 389, 454
AvaI	CYCGRG	1 cut(s)	803
AvaII	GGWCC	2 cut(s)	227, 758
BanII	GRGCYC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	194, 613
BcnI	CCSGG	1 cut(s)	769
BfaI	CTAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	1 cut(s)	769
Bme18I	GGWCC	2 cut(s)	227, 758
BmeT110I	CYCGRG	1 cut(s)	803
BmgT120I	GGNCC	3 cut(s)	227, 359, 758
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	769
BmrI	ACTGGG	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	769
BsaJI	CCNNGG	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	4 cut(s)	432, 479, 725, 767
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	2 cut(s)	230, 678
BseDI	CCNNGG	1 cut(s)	768
BseGI	GGATG	2 cut(s)	139, 832
BseLI	CCNNNNNNNGG	4 cut(s)	432, 479, 725, 767
BseMI	GCAATG	2 cut(s)	230, 678
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	361, 421
BsiHKCI	CYCGRG	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	768
BslI	CCNNNNNNNGG	4 cut(s)	432, 479, 725, 767
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	361, 421
BsoBI	CYCGRG	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	799
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	526, 739, 807
BspACI	CCGC	4 cut(s)	222, 606, 787, 821
BspANI	GGCC	2 cut(s)	361, 421
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	215
BsrDI	GCAATG	2 cut(s)	230, 678
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	3 cut(s)	526, 739, 807
Bst4CI	ACNGT	4 cut(s)	65, 115, 325, 383
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	2 cut(s)	300, 416
BstF5I	GGATG	2 cut(s)	139, 832
BstKTI	GATC	3 cut(s)	529, 742, 810
BstMBI	GATC	3 cut(s)	526, 739, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 773
BstSCI	CCNGG	1 cut(s)	767
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	361, 421
BtsCI	GGATG	2 cut(s)	139, 832
BtsIMutI	CAGTG	2 cut(s)	120, 321
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	678
Cfr13I	GGNCC	3 cut(s)	227, 359, 758
Csp6I	GTAC	5 cut(s)	160, 304, 563, 646, 753
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	2 cut(s)	488, 539
CviJI	RGCY	9 cut(s)	79, 148, 361, 373, 421, 436, 496, 767, 797
CviKI_1	RGCY	9 cut(s)	79, 148, 361, 373, 421, 436, 496, 767, 797
CviQI	GTAC	5 cut(s)	160, 304, 563, 646, 753
DdeI	CTNAG	2 cut(s)	300, 416
DpnI	GATC	3 cut(s)	528, 741, 809
DpnII	GATC	3 cut(s)	526, 739, 807
EciI	GGCGGA	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	799
Eco47I	GGWCC	2 cut(s)	227, 758
Eco88I	CYCGRG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	799
FaeI	CATG	2 cut(s)	491, 542
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	2 cut(s)	487, 538
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	2 cut(s)	146, 839
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	599
GluI	GCNGC	1 cut(s)	146
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	361, 421
HapII	CCGG	1 cut(s)	768
Hin1II	CATG	2 cut(s)	491, 542
HinfI	GANTC	4 cut(s)	167, 242, 412, 557
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	4 cut(s)	136, 380, 389, 454
Hpy166II	GTNNAC	2 cut(s)	462, 594
Hpy188I	TCNGA	4 cut(s)	482, 582, 739, 794
Hpy188III	TCNNGA	4 cut(s)	386, 599, 638, 690
Hpy8I	GTNNAC	2 cut(s)	462, 594
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	4 cut(s)	65, 115, 325, 383
HpyCH4V	TGCA	2 cut(s)	53, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 773
HpyF3I	CTNAG	2 cut(s)	300, 416
Hsp92II	CATG	2 cut(s)	491, 542
Kzo9I	GATC	3 cut(s)	526, 739, 807
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	599
MaeIII	GTNAC	5 cut(s)	59, 109, 168, 377, 500
MalI	GATC	3 cut(s)	528, 741, 809
MboI	GATC	3 cut(s)	526, 739, 807
MhlI	GDGCHC	1 cut(s)	799
MluCI	AATT	4 cut(s)	96, 251, 262, 467
MlyI	GAGTC	2 cut(s)	176, 421
MnlI	CCTC	6 cut(s)	327, 392, 452, 718, 737, 817
MroXI	GAANNNNTTC	1 cut(s)	697
MseI	TTAA	2 cut(s)	141, 567
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	1 cut(s)	769
Mva1269I	GAATGC	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	677, 773
NciI	CCSGG	1 cut(s)	769
NdeII	GATC	3 cut(s)	526, 739, 807
NlaIII	CATG	2 cut(s)	491, 542
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	59, 168, 377
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PctI	GAATGC	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	2 cut(s)	242, 557
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	2 cut(s)	175, 420
PpsI	GAGTC	2 cut(s)	175, 420
PpuMI	RGGWCCY	1 cut(s)	758
PsiI	TTATAA	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	3 cut(s)	227, 359, 758
PspPPI	RGGWCCY	1 cut(s)	758
RsaI	GTAC	5 cut(s)	161, 305, 564, 647, 754
RsaNI	GTAC	5 cut(s)	160, 304, 563, 646, 753
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	141, 567
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	3 cut(s)	526, 739, 807
Sau96I	GGNCC	3 cut(s)	227, 359, 758
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	2 cut(s)	176, 421
ScrFI	CCNGG	1 cut(s)	769
SduI	GDGCHC	1 cut(s)	799
SinI	GGWCC	2 cut(s)	227, 758
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	96, 251, 262, 467
SsiI	CCGC	4 cut(s)	222, 606, 787, 821
SspI	AATATT	4 cut(s)	9, 392, 586, 632
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	767
TaaI	ACNGT	4 cut(s)	65, 115, 325, 383
TaqI	TCGA	1 cut(s)	742
TasI	AATT	4 cut(s)	96, 251, 262, 467
TatI	WGTACW	2 cut(s)	159, 562
TfiI	GAWTC	2 cut(s)	242, 557
Tru1I	TTAA	2 cut(s)	141, 567
Tru9I	TTAA	2 cut(s)	141, 567
TscAI	CASTG	2 cut(s)	120, 328
TseFI	GTSAC	3 cut(s)	59, 168, 377
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	3 cut(s)	59, 168, 377
TspDTI	ATGAA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	120, 328
VpaK11BI	GGWCC	2 cut(s)	227, 758
XapI	RAATTY	1 cut(s)	251
XbaI	TCTAGA	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	1 cut(s)	599
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.