pycom11g13430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
12780244 .. 12781410
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGGAGAATAACATAAATAAAGCTGCGTTCGATGGACATTGCAGAATGTACCTCTTTCATGGGAATGTCTTGCAATCTATTGAGGCCAAACTAATTAAGTTTGAGCCGAGAAGCAGTGGAGAAACATTTCACTCACTGAGAACGGAGATGGTTTGGAGAAGGATTGTGTGTGCTTTTAACTACAGCTGTTGTTGTCTCCATCAACGTGCTGAACTGGTTCTGTATACCAAGCATGCTCTTGATGCCTTTTCAAAGAAAGGTTGGATATTTGTAATGGATTTGTATGGTGGTACATCCTCGGAATGCAAGACAAGGCTTCAAGGGACATTTGCCAATTTTACAGTACAAAACTTCAATTCAAATACTCCTTACTTATTGTCGCATCATTTGCACTCCTTCAGAATCCCAGTGGTGGTGTATAAAAAATGGTCACTGCCCGAGATCAAAGACTACTTAGAAGAGGCAGGCTTTAAGTCTGTCCATTTTTGGCTGCGAAAGATGGAAGACAGCAGAGAAATCCGAAGAAAAGATGGTCTTGGTGTCGGGCGAGACATAAAATATGAAGAGGCGAAACATTTTCAGCAACATGGTTCTTGGAATGCAGACATCGTAGGTTTTGATAGCTCCACGCACCAGGTAAGCTTTGCGTCGAGGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.64

Weight (kDa)

8.85

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 382
AfaI GTAC 3 cut(s) 50, 292, 345
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 4 cut(s) 252, 320, 355, 360
AjnI CCWGG 1 cut(s) 633
AluBI AGCT 4 cut(s) 23, 186, 624, 642
AluI AGCT 4 cut(s) 23, 186, 624, 642
Alw26I GTCTC 2 cut(s) 200, 543
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 23, 490
Asp700I GAANNNNTTC 2 cut(s) 126, 216
AvaI CYCGRG 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 10, 477
BccI CCATC 5 cut(s) 26, 142, 207, 493, 524
BciT130I CCWGG 1 cut(s) 635
BcoDI GTCTC 2 cut(s) 200, 543
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 2 cut(s) 24, 491
BlsI GCNGC 2 cut(s) 25, 492
Bme1390I CCNGG 1 cut(s) 635
BmeT110I CYCGRG 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 635
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 2 cut(s) 232, 391
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 219, 407
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 635
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 219, 407
BseXI GCAGC 2 cut(s) 10, 477
BshFI GGCC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 200, 543
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 2 cut(s) 308, 604
BsnI GGCC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 437
Bsp143I GATC 1 cut(s) 441
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 2 cut(s) 219, 407
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 441
BssNAI GTATAC 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 453, 558
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 234, 466
BstDEI CTNAG 2 cut(s) 137, 454
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 2 cut(s) 200, 543
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 2 cut(s) 242, 388
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 633
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 10, 477
BstV2I GAAGAC 1 cut(s) 510
BstZ17I GTATAC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 293
BtsI GCAGTG 2 cut(s) 121, 431
BtsIMutI CAGTG 4 cut(s) 121, 134, 414, 431
Cac8I GCNNGC 2 cut(s) 234, 466
CseI GACGC 1 cut(s) 636
CsiI ACCWGGT 1 cut(s) 633
Csp6I GTAC 3 cut(s) 49, 291, 344
CviAII CATG 3 cut(s) 59, 233, 587
CviJI RGCY 9 cut(s) 23, 86, 106, 186, 316, 468, 490, 624, 642
CviKI_1 RGCY 9 cut(s) 23, 86, 106, 186, 316, 468, 490, 624, 642
CviQI GTAC 3 cut(s) 49, 291, 344
DdeI CTNAG 2 cut(s) 137, 454
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 453, 558
EarI CTCTTC 2 cut(s) 453, 558
Eco57I CTGAAG 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 633
FaeI CATG 3 cut(s) 62, 236, 590
FaiI YATR 9 cut(s) 14, 60, 225, 234, 285, 420, 554, 561, 588
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 337
FatI CATG 3 cut(s) 58, 232, 586
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 24, 491
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 24, 491
GluI GCNGC 2 cut(s) 24, 491
HaeIII GGCC 1 cut(s) 86
HgaI GACGC 1 cut(s) 636
Hin1II CATG 3 cut(s) 62, 236, 590
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 3 cut(s) 301, 401, 521
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 652
HpyAV CCTTC 2 cut(s) 153, 406
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 5 cut(s) 42, 73, 306, 391, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 388
HpyF3I CTNAG 2 cut(s) 137, 454
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 3 cut(s) 62, 236, 590
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 629
LpnPI CCDG 5 cut(s) 200, 420, 450, 620, 647
Lsp1109I GCAGC 2 cut(s) 10, 477
LweI GCATC 2 cut(s) 232, 391
MabI ACCWGGT 1 cut(s) 633
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 429
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 4 cut(s) 470, 515, 534, 575
MluCI AATT 3 cut(s) 93, 334, 355
MmeI TCCRAC 2 cut(s) 242, 636
MnlI CCTC 6 cut(s) 62, 76, 307, 454, 559, 645
MroXI GAANNNNTTC 2 cut(s) 126, 216
MseI TTAA 3 cut(s) 96, 177, 471
MslI CAYNNNNRTG 2 cut(s) 63, 204
MspA1I CMGCKG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 635
Mva1269I GAATGC 2 cut(s) 308, 604
MvaI CCWGG 1 cut(s) 635
MwoI GCNNNNNNNGC 2 cut(s) 242, 388
NdeII GATC 1 cut(s) 441
NlaIII CATG 3 cut(s) 62, 236, 590
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 429
NspI RCATGY 1 cut(s) 236
PaeI GCATGC 1 cut(s) 236
PctI GAATGC 2 cut(s) 308, 604
PdmI GAANNNNTTC 2 cut(s) 126, 216
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 2 cut(s) 25, 492
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 3 cut(s) 50, 292, 345
RsaNI GTAC 3 cut(s) 49, 291, 344
RseI CAYNNNNRTG 2 cut(s) 63, 204
SaqAI TTAA 3 cut(s) 96, 177, 471
SatI GCNGC 2 cut(s) 24, 491
Sau3AI GATC 1 cut(s) 441
ScrFI CCNGG 1 cut(s) 635
SexAI ACCWGGT 1 cut(s) 633
SfaNI GCATC 2 cut(s) 232, 391
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 63, 204
SphI GCATGC 1 cut(s) 236
Sse9I AATT 3 cut(s) 93, 334, 355
StyD4I CCNGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 30, 650
TasI AATT 3 cut(s) 93, 334, 355
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 3 cut(s) 96, 177, 471
Tru9I TTAA 3 cut(s) 96, 177, 471
TscAI CASTG 4 cut(s) 121, 141, 414, 438
TseFI GTSAC 1 cut(s) 429
TseI GCWGC 2 cut(s) 23, 490
Tsp45I GTSAC 1 cut(s) 429
TspDTI ATGAA 2 cut(s) 47, 576
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 4 cut(s) 121, 141, 414, 438
XceI RCATGY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 2 cut(s) 126, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.