Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13208085 .. 13208941

Gene Structure 857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATATCTGATGTAACTGCACCATGTGGTAGTGTGGTACATGAATGGTCCCGTCTAGTTAATCCGTATTGGGAGACCATACTATTATGTGCTGAAAAGATTGGATTGGACTATATGGATGTTGAAGGGCTGAAAAAGCTTAAACAAGAAGAAATTTCCTACCCTTGTTACTCACCAAGAATCCCTCAAGTCGAAGGGGTCTCCGAGACAAAAGCAATGATCGAGTTCCAACTGAAGAAGCATCTGCCCATGGAACTTGCTGTAGGAAATGTCTCCATGGAAGAGAAGCGGATCTTCCCTGTTCCGGTACGATGCTTGAACCTGAAGACTACTATGGGCAAACCATTTCGCATCTATGGCGAAATTGGTCGATTGCCTCTGGAGATGAGATGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L1

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

6.73

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	153
AcuI	CTGAAG	2 cut(s)	254, 344
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	39, 309
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	125, 319
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	4 cut(s)	68, 200, 205, 277
AlwI	GGATC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	332
BccI	CCATC	1 cut(s)	384
BcoDI	GTCTC	4 cut(s)	68, 200, 205, 277
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	3 cut(s)	250, 302, 360
BpiI	GAAGAC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	171
BsaI	GGTCTC	2 cut(s)	68, 205
BsaJI	CCNNGG	2 cut(s)	249, 276
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	249, 276
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	4 cut(s)	68, 200, 205, 277
BsmFI	GGGAC	1 cut(s)	34
Bso31I	GGTCTC	2 cut(s)	68, 205
Bsp143I	GATC	2 cut(s)	219, 291
Bsp19I	CCATGG	2 cut(s)	249, 276
BspACI	CCGC	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	299
BspTNI	GGTCTC	2 cut(s)	68, 205
BsrDI	GCAATG	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	249, 276
BssMI	GATC	2 cut(s)	219, 291
BssT1I	CCWWGG	2 cut(s)	249, 276
Bst6I	CTCTTC	1 cut(s)	276
BstDSI	CCRYGG	2 cut(s)	249, 276
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	222, 294
BstMAI	GTCTC	4 cut(s)	68, 200, 205, 277
BstMBI	GATC	2 cut(s)	219, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 357
BstSFI	CTRYAG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BtgI	CCRYGG	2 cut(s)	249, 276
BtsCI	GGATG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	38, 308
CviAII	CATG	4 cut(s)	24, 41, 250, 277
CviJI	RGCY	2 cut(s)	130, 139
CviKI_1	RGCY	2 cut(s)	130, 139
CviQI	GTAC	2 cut(s)	38, 308
DpnI	GATC	2 cut(s)	221, 293
DpnII	GATC	2 cut(s)	219, 291
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	249, 276
Eco31I	GGTCTC	2 cut(s)	68, 205
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	254, 344
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	249, 276
ErhI	CCWWGG	2 cut(s)	249, 276
FaeI	CATG	4 cut(s)	27, 44, 253, 280
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	23, 40, 249, 276
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	4 cut(s)	27, 44, 253, 280
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	10, 205
Hpy188III	TCNNGA	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	119, 188
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 357
Hsp92II	CATG	4 cut(s)	27, 44, 253, 280
Kzo9I	GATC	2 cut(s)	219, 291
LpnPI	CCDG	4 cut(s)	312, 318, 335, 365
LweI	GCATC	3 cut(s)	250, 302, 360
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	13, 167
MalI	GATC	2 cut(s)	221, 293
MboI	GATC	2 cut(s)	219, 291
MboII	GAAGA	5 cut(s)	161, 247, 286, 293, 337
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	2 cut(s)	153, 363
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	195, 387
MseI	TTAA	2 cut(s)	60, 141
MspI	CCGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	136, 357
NcoI	CCATGG	2 cut(s)	249, 276
NdeII	GATC	2 cut(s)	219, 291
NlaIII	CATG	4 cut(s)	27, 44, 253, 280
NlaIV	GGNNCC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	2 cut(s)	39, 309
RsaNI	GTAC	2 cut(s)	38, 308
SaqAI	TTAA	2 cut(s)	60, 141
Sau3AI	GATC	2 cut(s)	219, 291
Sau96I	GGNCC	1 cut(s)	48
SetI	ASST	2 cut(s)	141, 324
SfaNI	GCATC	3 cut(s)	250, 302, 360
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	153, 363
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	1 cut(s)	56
StyI	CCWWGG	2 cut(s)	249, 276
TaqI	TCGA	3 cut(s)	192, 222, 370
TasI	AATT	2 cut(s)	153, 363
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	60, 141
Tru9I	TTAA	2 cut(s)	60, 141
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.