pycom11g13860

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
13692844 .. 13693985
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGCTTGATTTAGAACTTTTTGGCTCAGGTATTAGACTTGTTTCCCTGGCATTTTGCTTTCAAACGTTAAGGAATTTAATATTCATTGGCGATGAAATGACCAAAATTTGTAATATGTTTAGGCATGATCTTGTCCATAAAATGACAAACAAACATCTCTCCAATTTTGAAATCAGAAAGGCCTGCAGCAACAGCACAAACCCTAATCACCACTTTTTCTTTAGGGTTCATTCAACCCTGAACCTTATAAATATTGCCCTTGTGATTGAATATTTCTACAATTTAATCAAGTTTCCAAATATGGCAGCTCTCAAATTCTTTTCACTACTAATTGCTTCAATCGCATTTGTCCAAATGGCAATGGCCGGAGACCCGGACATTATTACCGACTTCATTGCTCCTCCAAACGGAAAAGTAGATGGCAACTTCTTCACATACACCGCATTTCGCGCTGTTGTTGGGGGCGGCCCTCCCACGGCTTTCAAGATATTAAAGGCAACCATGGCTGAGTTCCCTGCTCTCAATGGCCAGAGTGTTTCATACGCCGTCCTCGAATTCCCATCTAATAGTACCAATCCACCACACACTCATCCTCGCGCCGCTGAACTCCTTTTCCTTATTGACGGTACCCTCGAAGTCGGTTTCGTGGACACCAAAAACAAACTCTTTACACAGACCCTTCAAGTAGTACAATGCTCGATCCACAATTCCCAGCTCTGGCAATTTCTGCCTTTGGAAGTGCAAATGCAGGTACCGTATCAATACCCAGCACCTTGTTTGCCACCGGCGTTGACGACAATATCTTGGCTATCTCCTTCAAGACCGATGTTGCCACCATTCAAAAGCTCAAGGCTGGACTTGCACCCAAGCCATGAGGACAGAATTGTTAACCAGAAGTTCAATGTTCAGCTCAAGCAATTTTCTATCCCTTTTTTACTTCTAATTCTGTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

319

Amino Acids

35.97

Weight (kDa)

8.25

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 165 - 228 5.1e-13 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 739
Acc65I GGTACC 2 cut(s) 626, 751
AccB1I GGYRCC 2 cut(s) 626, 751
AccII CGCG 2 cut(s) 450, 597
AciI CCGC 3 cut(s) 441, 465, 600
AclI AACGTT 1 cut(s) 65
AclWI GGATC 1 cut(s) 694
AcoI YGGCCR 2 cut(s) 363, 526
AcsI RAATTY 4 cut(s) 73, 105, 314, 554
AfaI GTAC 4 cut(s) 571, 628, 690, 753
AfiI CCNNNNNNNGG 3 cut(s) 407, 475, 717
AjnI CCWGG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 4 cut(s) 308, 715, 846, 910
AluI AGCT 4 cut(s) 308, 715, 846, 910
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 1 cut(s) 694
AoxI GGCC 4 cut(s) 180, 363, 466, 526
ApeKI GCWGC 2 cut(s) 186, 305
ApoI RAATTY 4 cut(s) 73, 105, 314, 554
Asp718I GGTACC 2 cut(s) 626, 751
AspLEI GCGC 2 cut(s) 452, 599
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 200
BalI TGGCCA 1 cut(s) 528
BanI GGYRCC 2 cut(s) 626, 751
BbvI GCAGC 2 cut(s) 198, 317
BccI CCATC 2 cut(s) 413, 568
BceAI ACGGC 2 cut(s) 492, 530
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 739
BisI GCNGC 4 cut(s) 187, 306, 466, 600
BlsI GCNGC 4 cut(s) 188, 307, 467, 601
Bme1390I CCNGG 2 cut(s) 47, 374
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 628, 753
BmrFI CCNGG 2 cut(s) 47, 374
Bpu10I CCTNAGC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 832, 896
BpuMI CCSGG 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 45, 474, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 407, 475, 717
Bse118I RCCGGY 1 cut(s) 784
Bse3DI GCAATG 2 cut(s) 366, 393
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 45, 474, 501
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 3 cut(s) 407, 475, 717
BseMI GCAATG 2 cut(s) 366, 393
BseMII CTCAG 2 cut(s) 39, 498
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 198, 317
BseYI CCCAGC 2 cut(s) 711, 766
Bsh1236I CGCG 2 cut(s) 450, 597
BshFI GGCC 4 cut(s) 182, 365, 468, 528
BshNI GGYRCC 2 cut(s) 626, 751
BsiSI CCGG 3 cut(s) 366, 374, 785
BslI CCNNNNNNNGG 3 cut(s) 407, 475, 717
BsmAI GTCTC 1 cut(s) 363
BsnI GGCC 4 cut(s) 182, 365, 468, 528
Bso31I GGTCTC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 127, 699
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 3 cut(s) 441, 465, 600
BspANI GGCC 4 cut(s) 182, 365, 468, 528
BspCNI CTCAG 2 cut(s) 38, 499
BspFNI CGCG 2 cut(s) 450, 597
BspLI GGNNCC 2 cut(s) 628, 753
BspMAI CTGCAG 1 cut(s) 188
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 1 cut(s) 694
BspT107I GGYRCC 2 cut(s) 626, 751
BspTNI GGTCTC 1 cut(s) 363
BsrDI GCAATG 2 cut(s) 366, 393
BsrFI RCCGGY 1 cut(s) 784
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 3 cut(s) 45, 474, 501
BssMI GATC 2 cut(s) 127, 699
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 626, 756
BstAPI GCANNNNNTGC 1 cut(s) 727
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 2 cut(s) 25, 507
BstDSI CCRYGG 2 cut(s) 474, 501
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 2 cut(s) 450, 597
BstHHI GCGC 2 cut(s) 452, 599
BstKTI GATC 2 cut(s) 130, 702
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 2 cut(s) 127, 699
BstMWI GCNNNNNNNGC 6 cut(s) 192, 341, 449, 503, 727, 859
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 45, 372
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 2 cut(s) 450, 597
BstV1I GCAGC 2 cut(s) 198, 317
BsuRI GGCC 4 cut(s) 182, 365, 468, 528
BtgI CCRYGG 2 cut(s) 474, 501
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 2 cut(s) 452, 599
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 4 cut(s) 570, 627, 689, 752
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 3 cut(s) 125, 502, 872
CviQI GTAC 4 cut(s) 570, 627, 689, 752
DdeI CTNAG 2 cut(s) 25, 507
DpnI GATC 2 cut(s) 129, 701
DpnII GATC 2 cut(s) 127, 699
EaeI YGGCCR 2 cut(s) 363, 526
Eco130I CCWWGG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 3 cut(s) 128, 505, 875
FaiI YATR 9 cut(s) 116, 126, 138, 248, 302, 436, 503, 541, 873
FatI CATG 3 cut(s) 124, 501, 871
Fnu4HI GCNGC 4 cut(s) 187, 306, 466, 600
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 4 cut(s) 187, 306, 466, 600
GlaI GCGC 2 cut(s) 451, 598
GluI GCNGC 4 cut(s) 187, 306, 466, 600
GsaI CCCAGC 2 cut(s) 715, 770
HaeIII GGCC 4 cut(s) 182, 365, 468, 528
HapII CCGG 3 cut(s) 366, 374, 785
HhaI GCGC 2 cut(s) 452, 599
Hin1II CATG 3 cut(s) 128, 505, 875
Hin6I GCGC 2 cut(s) 450, 597
HinP1I GCGC 2 cut(s) 450, 597
HincII GTYRAC 2 cut(s) 792, 889
HindII GTYRAC 2 cut(s) 792, 889
HpaI GTTAAC 1 cut(s) 889
HpaII CCGG 3 cut(s) 366, 374, 785
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 649, 792, 889
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 484, 819
Hpy8I GTNNAC 3 cut(s) 649, 792, 889
HpyAV CCTTC 2 cut(s) 689, 825
HpyCH4III ACNGT 2 cut(s) 626, 756
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 186, 742, 748, 862
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 341, 449, 503, 727, 859
HpyF3I CTNAG 2 cut(s) 25, 507
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 3 cut(s) 128, 505, 875
HspAI GCGC 2 cut(s) 450, 597
KpnI GGTACC 2 cut(s) 630, 755
KspAI GTTAAC 1 cut(s) 889
Kzo9I GATC 2 cut(s) 127, 699
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 2 cut(s) 198, 317
MaeII ACGT 1 cut(s) 65
MalI GATC 2 cut(s) 129, 701
MboI GATC 2 cut(s) 127, 699
MboII GAAGA 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 528
MluNI TGGCCA 1 cut(s) 528
MnlI CCTC 6 cut(s) 411, 480, 560, 603, 641, 868
Mox20I TGGCCA 1 cut(s) 528
MscI TGGCCA 1 cut(s) 528
MseI TTAA 5 cut(s) 68, 77, 284, 491, 888
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 3 cut(s) 366, 374, 785
MspR9I CCNGG 2 cut(s) 47, 374
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 450, 597
MwoI GCNNNNNNNGC 6 cut(s) 192, 341, 449, 503, 727, 859
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 501
NdeII GATC 2 cut(s) 127, 699
NlaIII CATG 3 cut(s) 128, 505, 875
NlaIV GGNNCC 2 cut(s) 628, 753
PceI AGGCCT 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 549, 630
PkrI GCNGC 4 cut(s) 188, 307, 467, 601
PsiI TTATAA 1 cut(s) 248
Psp1406I AACGTT 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 2 cut(s) 711, 766
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 628, 753
PspPI GGNCC 1 cut(s) 467
PstI CTGCAG 1 cut(s) 188
RsaI GTAC 4 cut(s) 571, 628, 690, 753
RsaNI GTAC 4 cut(s) 570, 627, 689, 752
SaqAI TTAA 5 cut(s) 68, 77, 284, 491, 888
SatI GCNGC 4 cut(s) 187, 306, 466, 600
Sau3AI GATC 2 cut(s) 127, 699
Sau96I GGNCC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 47, 374
SetI ASST 9 cut(s) 31, 68, 246, 310, 717, 753, 775, 848, 912
SfcI CTRYAG 1 cut(s) 184
SgrAI CRCCGGYG 1 cut(s) 784
SmlI CTYRAG 2 cut(s) 847, 911
SmoI CTYRAG 2 cut(s) 847, 911
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 3 cut(s) 441, 465, 600
SspI AATATT 3 cut(s) 81, 253, 272
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 45, 372
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 626, 756
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 552, 633, 698
TaqII GACCGA 1 cut(s) 838
TatI WGTACW 1 cut(s) 688
TauI GCSGC 2 cut(s) 468, 602
Tru1I TTAA 5 cut(s) 68, 77, 284, 491, 888
Tru9I TTAA 5 cut(s) 68, 77, 284, 491, 888
TseI GCWGC 2 cut(s) 186, 305
TspDTI ATGAA 5 cut(s) 73, 108, 218, 382, 528
TspGWI ACGGA 1 cut(s) 423
XapI RAATTY 4 cut(s) 73, 105, 314, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.