pycom11g14020

Belongs to the synaptobrevin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
13818452 .. 13819861
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGAGATTCATGAAGAATTATGGCAGAGTTGCCCCTTATGCTCCGGCTTATGCGATGAACGACGAGTTTTCGAGGGTGTTGCATCAACAAATGGAGTTTTTCTCCAGTAATCCTAGTGCCGACACTCTCAACCGTGTGAGGAGCGAAGTTGGTGAGATACGAACTATAATGGTGGACAACATCGAAAAGATATTGGAGAGGGGTGACCGGATTGAGCTACTTGTTGACAAAACTGCAACTATGCAAGATAGTGCATTTCACTTCAAGAAGCAGTCTAAACGCCTTCGTCGAGCTCTGTGGATGAAAAATGCAAAGCTCTTGGCCCTGTTGACATGCTTGATTGTCGTGCTTCTGTACATCATAATTGCTGCTTGTTGTGGAGGCATCACACTACCTTCCTGCAGGTCTTGA

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

9.51

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 43 - 122 3.4e-28 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 3 cut(s) 217, 293, 316
AluI AGCT 3 cut(s) 217, 293, 316
Alw21I GWGCWC 1 cut(s) 295
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 164, 215
BanII GRGCYC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 400
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 322
BmsI GCATC 2 cut(s) 91, 393
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 2 cut(s) 44, 208
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 354
BspANI GGCC 1 cut(s) 323
BspHI TCATGA 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 404
BspMI ACCTGC 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 354
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 336
BstPI GGTNACC 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 400
BstV1I GCAGC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 355
CviAII CATG 2 cut(s) 10, 333
CviJI RGCY 5 cut(s) 47, 217, 293, 316, 323
CviKI_1 RGCY 5 cut(s) 47, 217, 293, 316, 323
CviQI GTAC 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 293
Eco91I GGTNACC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 293
EcoO65I GGTNACC 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 2 cut(s) 13, 336
FaiI YATR 8 cut(s) 11, 21, 39, 51, 167, 242, 334, 362
FatI CATG 2 cut(s) 9, 332
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 44, 208
Hin1II CATG 2 cut(s) 13, 336
HincII GTYRAC 2 cut(s) 226, 330
HindII GTYRAC 2 cut(s) 226, 330
HinfI GANTC 1 cut(s) 6
HpaII CCGG 2 cut(s) 44, 208
HphI GGTGA 2 cut(s) 164, 215
Hpy166II GTNNAC 3 cut(s) 175, 226, 330
Hpy188III TCNNGA 3 cut(s) 10, 265, 408
Hpy8I GTNNAC 3 cut(s) 175, 226, 330
Hpy99I CGWCG 2 cut(s) 65, 291
HpyAV CCTTC 2 cut(s) 293, 405
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 6 cut(s) 82, 236, 244, 254, 311, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 13, 336
LmnI GCTCC 2 cut(s) 46, 141
LpnPI CCDG 5 cut(s) 57, 118, 221, 338, 388
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 2 cut(s) 91, 393
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 2 cut(s) 16, 363
MnlI CCTC 4 cut(s) 66, 132, 192, 374
MspI CCGG 2 cut(s) 44, 208
MwoI GCNNNNNNNGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 13, 336
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 336
PagI TCATGA 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PfeI GAWTC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 404
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SacI GAGCTC 1 cut(s) 295
SatI GCNGC 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 322
SbfI CCTGCAGG 1 cut(s) 404
SdaI CCTGCAGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 295
SetI ASST 5 cut(s) 219, 295, 318, 397, 407
SfaNI GCATC 2 cut(s) 91, 393
SfcI CTRYAG 1 cut(s) 400
Sse8387I CCTGCAGG 1 cut(s) 404
Sse9I AATT 2 cut(s) 16, 363
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 295
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 71, 183, 289
TasI AATT 2 cut(s) 16, 363
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 6
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 26, 71, 317
XceI RCATGY 1 cut(s) 336
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.