Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13946588 .. 13947904

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAGCACCTGATCCGGTTCCTCTCTTATCAGCAGCAACAGTCAAACAACCAATCGGCCCGCGTCGACTGTATGGACATCACCGACCTTCTGTCTCTCGCTAAGAGCCCAATTCCAAAGCAGAACATCACAGATTGGTCGATCGCTTTCTGGGTTTTGCTTCTCCTACTCTCGATTTCAATCTGGCAAAAAATGCAAGCGTCAACTTATGGTTCAGTAAAGGGGAAGTTGGGGTTTGAAGATCAAAACCAAAGAAGGGTATTGGGTTTTGAAGAATTGAAAAATAGAGCAAGTACAGGGTCCAGGAATCTGTGGGTTGCTGAGAGGAGAACTTGCTCTGGTGGATTGAGCCTCCGTGCCACAACGCCGGCGATGGGAGCCAAGCTTGCCGGTCTTAGAATGGGGTCTGATGGGATTTCCATGTCCACTTTGAAACCCAGATCAGTCCAGGCTCATGCTTCTGATGGAGATGTTGAGAGTCTTATTCCCTCCAAGCCTTGGGGGGAAATCCTCTGGAACATTATTGCCGTGCCACAGTTGGATCATTTACCGGTGGATCGTTGGCTGACAAGTTTGGCATCACTTTTCTTGTTACAACAGATGGCTGGGATAAATGCTGTGGTTTATTATTCTACTTCTGTCTTCCGCACTGCTGGCATTACATCTGATGTTGCAGCGAGTGCTCTGGTTGGATTAGCAAATGTCTTGGGCACAGCTGTTGCATCCTCATTGATGGACAAACAGGGAAGGAAAAGTCTTCTACTCACAAGCTTCGGTGGAATGGCTGCTTCGATGTTGCTGCTTTCACTGTCCTTTACATGGAAAGCCCTTGCTTCATATTCTGCCCCCCTTTCTGTCGCTGGAACTGTTCTCTATGTATTGTCCTTTTCACTTGGCGCTGGCCCTGTGCCTGCTCTTCTTCTACCAGAGATTTTTGCTTCAAGAATCAGAGCAAAAGCAGTTTCTTTGTCATTGGGCATGCACTGGATTTCAAACTTCGTCATAGGCCTCTACTTCTTGAGCCTTGTAACTAAGTTCGGGATCGGCACAGTGTATTTTGGATTCGCTGGCGTCTGCCTTCTGGCTGTCTTGTACATAGCTGGTAATATTGTTGAAACGAAAGGTCGTTCGTTGGAGGAAATAGAGCGTGCTCTTAGTGTTGTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

390

Amino Acids

41.99

Weight (kDa)

9.49

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	189 - 384	2.7e-48	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	63
AciI	CCGC	2 cut(s)	61, 646
AclWI	GGATC	4 cut(s)	7, 549, 564, 1049
AcyI	GRCGYC	1 cut(s)	1071
AfaI	GTAC	2 cut(s)	295, 1094
AfiI	CCNNNNNNNGG	4 cut(s)	256, 374, 498, 819
AgeI	ACCGGT	1 cut(s)	550
AgsI	TTSAA	8 cut(s)	180, 239, 272, 280, 433, 942, 993, 1115
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	302, 447
AluBI	AGCT	4 cut(s)	385, 716, 771, 1100
AluI	AGCT	4 cut(s)	385, 716, 771, 1100
Alw21I	GWGCWC	3 cut(s)	9, 685, 1153
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	4 cut(s)	7, 549, 564, 1049
AoxI	GGCC	3 cut(s)	57, 901, 1006
ApeKI	GCWGC	4 cut(s)	34, 674, 785, 799
AsiGI	ACCGGT	1 cut(s)	550
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	3 cut(s)	58, 300, 902
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	634, 749
Bbv12I	GWGCWC	3 cut(s)	9, 685, 1153
BbvI	GCAGC	4 cut(s)	46, 686, 772, 786
BccI	CCATC	5 cut(s)	367, 404, 458, 595, 727
BceAI	ACGGC	1 cut(s)	512
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciT130I	CCWGG	2 cut(s)	304, 449
BcoDI	GTCTC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	900
BisI	GCNGC	4 cut(s)	35, 675, 786, 800
BlsI	GCNGC	4 cut(s)	36, 676, 787, 801
Bme1390I	CCNGG	2 cut(s)	304, 449
Bme18I	GGWCC	1 cut(s)	300
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	58, 300, 902
BmiI	GGNNCC	3 cut(s)	20, 301, 379
BmrFI	CCNGG	2 cut(s)	304, 449
BmsI	GCATC	2 cut(s)	587, 731
BpiI	GAAGAC	2 cut(s)	634, 749
BpuEI	CTTGAG	1 cut(s)	1039
BsaBI	GATNNNNATC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	1071
BsaJI	CCNNGG	1 cut(s)	497
BsaWI	WCCGGW	2 cut(s)	15, 550
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 374, 498, 819
Bse118I	RCCGGY	3 cut(s)	367, 389, 550
Bse1I	ACTGG	1 cut(s)	989
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	304, 449
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	722
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	4 cut(s)	256, 374, 498, 819
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	989
BseRI	GAGGAG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	4 cut(s)	46, 686, 772, 786
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	59, 903, 1008
BshTI	ACCGGT	1 cut(s)	550
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	3 cut(s)	9, 685, 1153
BsiSI	CCGG	4 cut(s)	16, 368, 390, 551
BslI	CCNNNNNNNGG	4 cut(s)	256, 374, 498, 819
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	59, 903, 1008
Bsp1286I	GDGCHC	5 cut(s)	9, 110, 685, 713, 1153
Bsp1407I	TGTACA	1 cut(s)	1092
Bsp143I	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
BspACI	CCGC	2 cut(s)	61, 646
BspANI	GGCC	3 cut(s)	59, 903, 1008
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	20, 301, 379
BspPI	GGATC	4 cut(s)	7, 549, 564, 1049
BspQI	GCTCTTC	1 cut(s)	921
BsrFI	RCCGGY	3 cut(s)	367, 389, 550
BsrGI	TGTACA	1 cut(s)	1092
BsrI	ACTGG	1 cut(s)	989
BssAI	RCCGGY	3 cut(s)	367, 389, 550
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
BssNI	GRCGYC	1 cut(s)	1071
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	2 cut(s)	304, 449
Bst4CI	ACNGT	6 cut(s)	42, 71, 537, 810, 868, 1051
Bst6I	CTCTTC	1 cut(s)	921
BstACI	GRCGYC	1 cut(s)	1071
BstAPI	GCANNNNNTGC	2 cut(s)	193, 680
BstAUI	TGTACA	1 cut(s)	1092
BstDEI	CTNAG	5 cut(s)	102, 321, 395, 1032, 1154
BstF5I	GGATG	1 cut(s)	722
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	7 cut(s)	15, 144, 244, 443, 544, 559, 1044
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	5 cut(s)	193, 377, 386, 654, 680
BstNI	CCWGG	2 cut(s)	304, 449
BstNSI	RCATGY	1 cut(s)	982
BstSCI	CCNGG	2 cut(s)	302, 447
BstSLI	GKGCMC	1 cut(s)	713
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	46, 686, 772, 786
BstV2I	GAAGAC	2 cut(s)	634, 749
BsuRI	GGCC	3 cut(s)	59, 903, 1008
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	722
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	4 cut(s)	648, 806, 982, 1056
CfoI	GCGC	1 cut(s)	899
Cfr10I	RCCGGY	3 cut(s)	367, 389, 550
Cfr13I	GGNCC	3 cut(s)	58, 300, 902
CseI	GACGC	3 cut(s)	52, 189, 1060
Csp6I	GTAC	2 cut(s)	294, 1093
CspAI	ACCGGT	1 cut(s)	550
CviAII	CATG	4 cut(s)	421, 455, 819, 979
CviQI	GTAC	2 cut(s)	294, 1093
DdeI	CTNAG	5 cut(s)	102, 321, 395, 1032, 1154
DpnI	GATC	7 cut(s)	14, 143, 243, 442, 543, 558, 1043
DpnII	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	921
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	921
Eco130I	CCWWGG	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	1008
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	302, 447
EcoT14I	CCWWGG	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	4 cut(s)	424, 458, 822, 982
FatI	CATG	4 cut(s)	420, 454, 818, 978
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	35, 675, 786, 800
FokI	GGATG	1 cut(s)	709
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	4 cut(s)	35, 675, 786, 800
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	4 cut(s)	35, 675, 786, 800
GsaI	CCCAGC	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	3 cut(s)	59, 903, 1008
HapII	CCGG	4 cut(s)	16, 368, 390, 551
HgaI	GACGC	3 cut(s)	52, 189, 1060
HhaI	GCGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	1071
Hin1II	CATG	4 cut(s)	424, 458, 822, 982
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	2 cut(s)	67, 204
HindII	GTYRAC	2 cut(s)	67, 204
HindIII	AAGCTT	2 cut(s)	383, 769
HinfI	GANTC	4 cut(s)	307, 478, 945, 1062
HpaII	CCGG	4 cut(s)	16, 368, 390, 551
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	67, 204, 426
Hpy188I	TCNGA	4 cut(s)	409, 463, 667, 950
Hpy188III	TCNNGA	5 cut(s)	172, 514, 942, 1018, 1039
Hpy8I	GTNNAC	3 cut(s)	67, 204, 426
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	98, 249, 741, 1088
HpyCH4III	ACNGT	6 cut(s)	42, 71, 537, 810, 868, 1051
HpyCH4V	TGCA	4 cut(s)	196, 674, 722, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	193, 377, 386, 654, 680
HpyF3I	CTNAG	5 cut(s)	102, 321, 395, 1032, 1154
Hsp92I	GRCGYC	1 cut(s)	1071
Hsp92II	CATG	4 cut(s)	424, 458, 822, 982
HspAI	GCGC	1 cut(s)	897
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Kzo9I	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	2 cut(s)	4, 377
Lsp1109I	GCAGC	4 cut(s)	46, 686, 772, 786
LweI	GCATC	2 cut(s)	587, 731
MaeIII	GTNAC	3 cut(s)	591, 1027, 1162
MalI	GATC	7 cut(s)	14, 143, 243, 442, 543, 558, 1043
MboI	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
MboII	GAAGA	6 cut(s)	251, 284, 634, 749, 908, 911
MhlI	GDGCHC	5 cut(s)	9, 110, 685, 713, 1153
MluCI	AATT	2 cut(s)	111, 275
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	3 cut(s)	519, 670, 1113
MnlI	CCTC	8 cut(s)	32, 318, 362, 499, 521, 736, 1019, 1129
MreI	CGCCGGCG	1 cut(s)	367
MroNI	GCCGGC	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	4 cut(s)	16, 368, 390, 551
MspR9I	CCNGG	2 cut(s)	304, 449
MvaI	CCWGG	2 cut(s)	304, 449
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	5 cut(s)	193, 377, 386, 654, 680
NaeI	GCCGGC	1 cut(s)	369
NdeII	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	424, 458, 822, 982
NlaIV	GGNNCC	3 cut(s)	20, 301, 379
NmuCI	GTSAC	1 cut(s)	1162
NspI	RCATGY	1 cut(s)	982
PaeI	GCATGC	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	1008
PciSI	GCTCTTC	1 cut(s)	921
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	307, 945, 1062
PflMI	CCANNNNNTGG	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	36, 676, 787, 801
Ple19I	CGATCG	1 cut(s)	144
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	302, 447
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	302, 447
PspN4I	GGNNCC	3 cut(s)	20, 301, 379
PspPI	GGNCC	3 cut(s)	58, 300, 902
PvuI	CGATCG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	2 cut(s)	295, 1094
RsaNI	GTAC	2 cut(s)	294, 1093
SalI	GTCGAC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	921
SatI	GCNGC	4 cut(s)	35, 675, 786, 800
Sau3AI	GATC	7 cut(s)	12, 141, 241, 440, 541, 556, 1041
Sau96I	GGNCC	3 cut(s)	58, 300, 902
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	304, 449
SduI	GDGCHC	5 cut(s)	9, 110, 685, 713, 1153
SetI	ASST	7 cut(s)	12, 90, 387, 718, 773, 1102, 1126
SfaNI	GCATC	2 cut(s)	587, 731
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	1018
SmoI	CTYRAG	1 cut(s)	1018
SphI	GCATGC	1 cut(s)	982
Sse9I	AATT	2 cut(s)	111, 275
SseBI	AGGCCT	1 cut(s)	1008
SsiI	CCGC	2 cut(s)	61, 646
SspI	AATATT	1 cut(s)	1108
StuI	AGGCCT	1 cut(s)	1008
StyD4I	CCNGG	2 cut(s)	302, 447
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	6 cut(s)	42, 71, 537, 810, 868, 1051
TaqI	TCGA	4 cut(s)	66, 140, 173, 791
TasI	AATT	2 cut(s)	111, 275
TatI	WGTACW	2 cut(s)	293, 1092
TfiI	GAWTC	3 cut(s)	307, 945, 1062
TscAI	CASTG	4 cut(s)	655, 813, 989, 1056
TseFI	GTSAC	1 cut(s)	1162
TseI	GCWGC	4 cut(s)	34, 674, 785, 799
Tsp45I	GTSAC	1 cut(s)	1162
TspDTI	ATGAA	1 cut(s)	825
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	4 cut(s)	655, 813, 989, 1056
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	300
XceI	RCATGY	1 cut(s)	982
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.