pycom11g14390

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
14316264 .. 14318176
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1224 bp
ATGCTAATCTTCTATTACACCATCTTTTATGTATTTCTAACACAATATACCTTCTTTAAAATAATAAAAAAAGATATATTGTATTGTAGTCTTCCTTGTAGAACAAGGTTTGTATGTGTTCATATCATAAATTCTTATTGGATAATAAACAACAAACATTTTCAATCCCGCATCAATGCGCAGGTCAAACTTTCTAATTTGCTTCTACTTGTGCGATGTGTACTACTTCTGTATACAATTTCTTTAGATGCAAAGAAATCGGCGTGGCTTCTACCAAGGAGCACCTTTGTTTTGATTAGAAGAACTTCCGTTACGTACTGCTATAGTTCTTTGTTTATCAAAATTGGTTTTGTTTTCTTCTTTTGGAAATTTGTCCTTTGCCATCCAGATTTCACAATCCATATTTTGTGTGTTACAATTAACAATAATATTTCTACGACCAGTCTCATGGTGTTTGTTGAAGAAGTTATCCCGTTTGGTGCTTTATTAATTGCTGTTTATGTATTTATATGTTTATATTTTTGGCATATACTATTAGAAAATATATCTGTCAAGGATATGATTGCTATCTTGGAAAGGGGACCTCAGATATCAAAGACCACTTTGCTATATCGGTTGCATGAGAGAATCCAGTCCGACCTATCGCTTACAATCTGTCTGAAGGGTTCTAATGGCCTTACAGGGAAGCATGGAATTGTAAAATTTGAAAATTTCTTTACAGGTATGGAACGAGTAGCAATTGTTTTAAGGAAAATTCTACTTTTGTTGGCTGATGTGGCATTTTGTTTAGTTCATTTAGTTGATGAGTTTGTATATAAGCGCGAGCCATTTCTTAATGAACTGAACTCAAATTTGATAAGGATTGAACTAAAAACCTCTCACTTACAAGTTAAAGGAAAACTTTTTGCAGAAGTGACATGCATTCGTGCTATTTATGTAGTTTTGATGTTTTTCAGCTTCACGGGAGATGGGTCATGGTTAGACCTGGCATTCGTGTCGTGTTTCTCGTGTTCGTGTTGTTTTCATGTCATACCCGATAATGACCCAACCCGAAATCAACCCATTAATATTTTCAACAATAAAAATGAAAATGAAAAACATAATTTGACCCAAAAAAATGTAAAACACAATACTAAATTAGTATATCTTTTCATTACGAGTGATTACATTTTTCACACTTCTAGAATAATTATTATTAATTTTATTAATTTTTCACTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

408

Amino Acids

47.53

Weight (kDa)

9.21

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 233
AccII CGCG 1 cut(s) 822
AciI CCGC 1 cut(s) 169
AcsI RAATTY 6 cut(s) 130, 368, 701, 709, 753, 850
AcuI CTGAAG 1 cut(s) 680
AfaI GTAC 2 cut(s) 222, 317
AgsI TTSAA 5 cut(s) 164, 461, 707, 866, 1075
AjnI CCWGG 1 cut(s) 984
AluBI AGCT 1 cut(s) 957
AluI AGCT 1 cut(s) 957
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 449
AoxI GGCC 1 cut(s) 673
ApoI RAATTY 6 cut(s) 130, 368, 701, 709, 753, 850
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
AseI ATTAAT 4 cut(s) 488, 1065, 1197, 1206
Asp700I GAANNNNTTC 1 cut(s) 304
AspLEI GCGC 2 cut(s) 181, 822
AspS9I GGNCC 1 cut(s) 581
AvaII GGWCC 1 cut(s) 581
BauI CACGAG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 284
BccI CCATC 3 cut(s) 29, 390, 962
BcgI CGANNNNNNTGC 4 cut(s) 240, 274, 978, 1012
BciT130I CCWGG 1 cut(s) 986
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 1182
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 986
Bme18I GGWCC 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 986
BmsI GCATC 2 cut(s) 180, 238
BpiI GAAGAC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 441, 631
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 566
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 2 cut(s) 441, 631
Bsh1236I CGCG 1 cut(s) 822
BshFI GGCC 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 284
BslFI GGGAC 1 cut(s) 594
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 594
BsmI GAATGC 2 cut(s) 921, 989
BsnI GGCC 1 cut(s) 675
Bsp1286I GDGCHC 1 cut(s) 284
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 1 cut(s) 598
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 172
BsrI ACTGG 2 cut(s) 441, 631
BssECI CCNNGG 1 cut(s) 275
BssNAI GTATAC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 1006
BssT1I CCWWGG 1 cut(s) 275
Bst1107I GTATAC 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 1006
Bst2UI CCWGG 1 cut(s) 986
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 824
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 822
BstHHI GCGC 2 cut(s) 181, 822
BstMAI GTCTC 1 cut(s) 449
BstMWI GCNNNNNNNGC 1 cut(s) 776
BstNI CCWGG 1 cut(s) 986
BstNSI RCATGY 1 cut(s) 921
BstSCI CCNGG 1 cut(s) 984
BstSFI CTRYAG 1 cut(s) 322
BstSNI TACGTA 1 cut(s) 315
BstUI CGCG 1 cut(s) 822
BstV2I GAAGAC 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 382
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 824
CfoI GCGC 2 cut(s) 181, 822
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 221, 316
CviAII CATG 6 cut(s) 448, 620, 689, 918, 975, 1025
CviJI RGCY 5 cut(s) 268, 675, 770, 826, 957
CviKI_1 RGCY 5 cut(s) 268, 675, 770, 826, 957
CviQI GTAC 2 cut(s) 221, 316
DdeI CTNAG 1 cut(s) 585
DraI TTTAAA 1 cut(s) 58
Eco105I TACGTA 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 275
Eco32I GATATC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 680
EcoO109I RGGNCCY 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 984
EcoRV GATATC 1 cut(s) 591
EcoT14I CCWWGG 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 923
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 6 cut(s) 451, 623, 692, 921, 978, 1028
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 1 cut(s) 594
FatI CATG 6 cut(s) 447, 619, 688, 917, 974, 1024
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 233
FokI GGATG 1 cut(s) 369
FspBI CTAG 1 cut(s) 1182
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 2 cut(s) 180, 821
HaeIII GGCC 1 cut(s) 675
HhaI GCGC 2 cut(s) 181, 822
Hin1II CATG 6 cut(s) 451, 623, 692, 921, 978, 1028
Hin6I GCGC 2 cut(s) 179, 820
HinP1I GCGC 2 cut(s) 179, 820
HinfI GANTC 1 cut(s) 627
Hpy166II GTNNAC 2 cut(s) 221, 234
Hpy188I TCNGA 3 cut(s) 588, 637, 660
Hpy188III TCNNGA 2 cut(s) 386, 1182
Hpy8I GTNNAC 2 cut(s) 221, 234
HpyAV CCTTC 2 cut(s) 61, 655
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 251, 619, 908, 921
HpyF10VI GCNNNNNNNGC 1 cut(s) 776
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 6 cut(s) 451, 623, 692, 921, 978, 1028
HspAI GCGC 2 cut(s) 179, 820
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 8 cut(s) 167, 399, 454, 644, 666, 705, 971, 998
LweI GCATC 2 cut(s) 180, 238
MaeI CTAG 1 cut(s) 1182
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 3 cut(s) 310, 412, 913
MboII GAAGA 4 cut(s) 83, 312, 349, 473
MfeI CAATTG 1 cut(s) 738
MhlI GDGCHC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 2 cut(s) 594, 886
Mph1103I ATGCAT 1 cut(s) 923
MroXI GAANNNNTTC 1 cut(s) 304
MseI TTAA 9 cut(s) 57, 420, 488, 746, 834, 891, 1065, 1197, 1206
MspR9I CCNGG 1 cut(s) 986
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 2 cut(s) 921, 989
MvaI CCWGG 1 cut(s) 986
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 1 cut(s) 776
NlaIII CATG 6 cut(s) 451, 623, 692, 921, 978, 1028
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 913
NsbI TGCGCA 1 cut(s) 180
NsiI ATGCAT 1 cut(s) 923
NspI RCATGY 1 cut(s) 921
PcsI WCGNNNNNNNCGW 1 cut(s) 1004
PctI GAATGC 2 cut(s) 921, 989
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 627
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 581
PshBI ATTAAT 4 cut(s) 488, 1065, 1197, 1206
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 984
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
RsaI GTAC 2 cut(s) 222, 317
RsaNI GTAC 2 cut(s) 221, 316
SaqAI TTAA 9 cut(s) 57, 420, 488, 746, 834, 891, 1065, 1197, 1206
Sau96I GGNCC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 986
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 2 cut(s) 180, 238
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 1 cut(s) 581
SnaBI TACGTA 1 cut(s) 315
SsiI CCGC 1 cut(s) 169
SspI AATATT 2 cut(s) 430, 1069
SspMI CTAG 1 cut(s) 1182
StyD4I CCNGG 1 cut(s) 984
StyI CCWWGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 317
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 9 cut(s) 57, 420, 488, 746, 834, 891, 1065, 1197, 1206
Tru9I TTAA 9 cut(s) 57, 420, 488, 746, 834, 891, 1065, 1197, 1206
TseFI GTSAC 1 cut(s) 913
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 7 cut(s) 110, 782, 852, 1013, 1101, 1107, 1141
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 4 cut(s) 488, 1065, 1197, 1206
XapI RAATTY 6 cut(s) 130, 368, 701, 709, 753, 850
XbaI TCTAGA 1 cut(s) 1181
XceI RCATGY 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 1 cut(s) 1182
Zsp2I ATGCAT 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.