pycom11g14440

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
14393853 .. 14394131
279 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGACACTGTTTTGGAGATCGAGGACTCGGCTTTCCGCGGCCACCCGCACAGTGAGTTTTGGTAACGCTTTCACGTACACTGGGCATCTCGATTTTTATAACGGTACGGTATCGCCCAAGGGGATGAAAACTATGAACACATGCCTCTTCCTCGGTACCTTATCCTTCGGTTTATTCTTCAGTAGCCTCCTGGTTTGGATTGCGAATAAAGGTGACAGAAGGCAAAAATGGCGGATGGCTTGCAAAAACCATAAATCAGGACAGGCTCAATTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

93

Amino Acids

10.51

Weight (kDa)

11.04

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
Acc65I GGTACC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 155
AccII CGCG 1 cut(s) 38
AciI CCGC 4 cut(s) 36, 38, 46, 232
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 163
AfaI GTAC 3 cut(s) 77, 106, 157
AjnI CCWGG 1 cut(s) 189
AoxI GGCC 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 155
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 191
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 36, 117, 151
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 36, 117, 151
BseGI GGATG 2 cut(s) 129, 240
BseNI ACTGG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 155
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 4 cut(s) 36, 38, 46, 232
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 36, 117, 151
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 4 cut(s) 9, 52, 104, 109
Bst6I CTCTTC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 241
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 129, 240
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 129, 240
BtsIMutI CAGTG 3 cut(s) 5, 57, 78
Cac8I GCNNGC 1 cut(s) 241
Cfr42I CCGCGG 1 cut(s) 39
Csp6I GTAC 3 cut(s) 76, 105, 156
CviAII CATG 1 cut(s) 141
CviJI RGCY 5 cut(s) 31, 41, 186, 239, 266
CviKI_1 RGCY 5 cut(s) 31, 41, 186, 239, 266
CviQI GTAC 3 cut(s) 76, 105, 156
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 144
FaiI YATR 4 cut(s) 99, 134, 142, 252
FatI CATG 1 cut(s) 140
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 136, 247
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 1 cut(s) 144
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 89, 258
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 175, 213
HpyCH4III ACNGT 4 cut(s) 9, 52, 104, 109
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 144
KpnI GGTACC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 66, 176, 203, 243, 248
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 62, 212
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 139, 169
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 4 cut(s) 15, 155, 161, 197
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 144
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 75
PsiI TTATAA 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 157
RsaI GTAC 3 cut(s) 77, 106, 157
RsaNI GTAC 3 cut(s) 76, 105, 156
SacII CCGCGG 1 cut(s) 39
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 17
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 191
SetI ASST 3 cut(s) 77, 161, 214
SfaNI GCATC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
Sse9I AATT 1 cut(s) 269
SsiI CCGC 4 cut(s) 36, 38, 46, 232
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 4 cut(s) 9, 52, 104, 109
TaiI ACGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 20, 90
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 41
TscAI CASTG 3 cut(s) 12, 57, 85
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 140, 149
TspRI CASTG 3 cut(s) 12, 57, 85
XceI RCATGY 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.