pycom11g14910

Outer envelope protein 80

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
15251880 .. 15255436
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGATCGATAGTTTTTTTCATTTCAGTCTGCAGATAGAACAAGGGATACCAGTTCTATCTAAATGGCTAATCTTCAACAAGTTTAAATTCGTTGCATCCAAGGGAGTCAAACTTGGGCCGGCATTTCTGTTGACAAGAATGACAGGTGGTTCCACTGTAGGGGACATGGCACCTTACCAAGCATTTGCAATTGGAGGTCTTGGCAGTGTTCGAGGGTATGGTGAAGGAGCAGTGGGATCTGGGAGATCGTGCCTGGTTGCAAATAGCGAGTTGACATTACCTTTTAACAAGATGATGGAAGGTGCTGTTTTCTTGGACTGTGGAACTGATTTGGGGTCTTCTCATCATGTACCTGGAAACCCAGCTCTGAGGCTTGGCAAACCAGGATCCGGAGTTGGGCTCGGATATGGCCTTCGTTTCAAATCACAGTTTGGCCATTTTGTAGTTGATTACGCTATCAATGCCTTTCAACAGAAAACAGTCTATTTTGGCATCAGCAACCTCGCTTCATGA

Protein Analysis

171

Amino Acids

18.05

Weight (kDa)

9.36

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Omp85 PF01103 8 - 166 1.7e-24 Omp85 superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 389
AclWI GGATC 3 cut(s) 244, 381, 394
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 159, 389, 396
AgsI TTSAA 3 cut(s) 76, 421, 470
AjnI CCWGG 3 cut(s) 252, 352, 382
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
AlwI GGATC 3 cut(s) 244, 381, 394
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 3 cut(s) 116, 409, 433
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 233
BalI TGGCCA 1 cut(s) 435
BamHI GGATCC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 330
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 3 cut(s) 254, 354, 384
BciVI GTATCC 1 cut(s) 39
BfmI CTRYAG 2 cut(s) 29, 156
BfuI GTATCC 1 cut(s) 39
Bme1390I CCNGG 3 cut(s) 254, 354, 384
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 151, 171, 388
BmrFI CCNGG 3 cut(s) 254, 354, 384
BmsI GCATC 2 cut(s) 104, 501
BpiI GAAGAC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 384, 416
Bsa29I ATCGAT 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 389, 396
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 50
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 3 cut(s) 254, 354, 384
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 159, 389, 396
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 361
BshFI GGCC 3 cut(s) 118, 411, 435
BshNI GGYRCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 6
BsiSI CCGG 2 cut(s) 119, 390
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 3 cut(s) 159, 389, 396
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 118, 411, 435
Bsp1286I GDGCHC 1 cut(s) 402
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 4 cut(s) 3, 236, 245, 386
BspANI GGCC 3 cut(s) 118, 411, 435
BspCNI CTCAG 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 389
BspHI TCATGA 1 cut(s) 509
BspLI GGNNCC 3 cut(s) 151, 171, 388
BspMAI CTGCAG 1 cut(s) 33
BspPI GGATC 3 cut(s) 244, 381, 394
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 4 cut(s) 3, 236, 245, 386
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 3 cut(s) 254, 354, 384
Bst4CI ACNGT 4 cut(s) 157, 320, 429, 481
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 4 cut(s) 6, 239, 248, 389
BstMBI GATC 4 cut(s) 3, 236, 245, 386
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 3 cut(s) 254, 354, 384
BstSCI CCNGG 3 cut(s) 252, 352, 382
BstSFI CTRYAG 2 cut(s) 29, 156
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 236, 386
BstYI RGATCY 2 cut(s) 236, 386
Bsu15I ATCGAT 1 cut(s) 6
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 3 cut(s) 118, 411, 435
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 1 cut(s) 95
BtsI GCAGTG 2 cut(s) 211, 237
BtsIMutI CAGTG 3 cut(s) 153, 211, 237
Cac8I GCNNGC 1 cut(s) 120
CciI TCATGA 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 6
Csp6I GTAC 1 cut(s) 350
CviAII CATG 3 cut(s) 166, 347, 510
CviJI RGCY 7 cut(s) 67, 118, 365, 373, 400, 411, 435
CviKI_1 RGCY 7 cut(s) 67, 118, 365, 373, 400, 411, 435
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 368
DpnI GATC 4 cut(s) 5, 238, 247, 388
DpnII GATC 4 cut(s) 3, 236, 245, 386
DraI TTTAAA 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 402
EcoRII CCWGG 3 cut(s) 252, 352, 382
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 3 cut(s) 169, 350, 513
FaiI YATR 5 cut(s) 167, 219, 348, 408, 511
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 165, 346, 509
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 365
HaeIII GGCC 3 cut(s) 118, 411, 435
HapII CCGG 2 cut(s) 119, 390
Hin1II CATG 3 cut(s) 169, 350, 513
HincII GTYRAC 2 cut(s) 132, 273
HindII GTYRAC 2 cut(s) 132, 273
HinfI GANTC 1 cut(s) 105
HpaII CCGG 2 cut(s) 119, 390
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 132, 273
Hpy188I TCNGA 2 cut(s) 369, 404
Hpy188III TCNNGA 2 cut(s) 390, 510
Hpy8I GTNNAC 2 cut(s) 132, 273
HpyAV CCTTC 3 cut(s) 218, 293, 422
HpyCH4III ACNGT 4 cut(s) 157, 320, 429, 481
HpyCH4V TGCA 4 cut(s) 31, 95, 188, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 368
Hsp92II CATG 3 cut(s) 169, 350, 513
Kpn2I TCCGGA 1 cut(s) 389
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 4 cut(s) 3, 236, 245, 386
LmnI GCTCC 1 cut(s) 227
LweI GCATC 2 cut(s) 104, 501
MalI GATC 4 cut(s) 5, 238, 247, 388
MboI GATC 4 cut(s) 3, 236, 245, 386
MboII GAAGA 2 cut(s) 64, 330
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 2 cut(s) 236, 386
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 2 cut(s) 86, 189
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 4 cut(s) 188, 206, 363, 512
Mox20I TGGCCA 1 cut(s) 435
MroI TCCGGA 1 cut(s) 389
MroNI GCCGGC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 435
MseI TTAA 2 cut(s) 84, 285
Msp20I TGGCCA 1 cut(s) 435
MspI CCGG 2 cut(s) 119, 390
MspR9I CCNGG 3 cut(s) 254, 354, 384
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 3 cut(s) 254, 354, 384
MwoI GCNNNNNNNGC 1 cut(s) 461
NaeI GCCGGC 1 cut(s) 120
NdeII GATC 4 cut(s) 3, 236, 245, 386
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 3 cut(s) 169, 350, 513
NlaIV GGNNCC 3 cut(s) 151, 171, 388
PagI TCATGA 1 cut(s) 509
PdiI GCCGGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 3 cut(s) 252, 352, 382
PspFI CCCAGC 1 cut(s) 361
PspGI CCWGG 3 cut(s) 252, 352, 382
PspN4I GGNNCC 3 cut(s) 151, 171, 388
PspPI GGNCC 1 cut(s) 116
PsrI GAACNNNNNNTAC 2 cut(s) 30, 62
PstI CTGCAG 1 cut(s) 33
PsuI RGATCY 2 cut(s) 236, 386
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 84, 285
Sau3AI GATC 4 cut(s) 3, 236, 245, 386
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 254, 354, 384
SduI GDGCHC 1 cut(s) 402
SetI ASST 8 cut(s) 148, 175, 199, 283, 304, 355, 367, 504
SfaNI GCATC 2 cut(s) 104, 501
SfcI CTRYAG 2 cut(s) 29, 156
Sse9I AATT 2 cut(s) 86, 189
StyD4I CCNGG 3 cut(s) 252, 352, 382
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 157, 320, 429, 481
TaqI TCGA 2 cut(s) 6, 211
TasI AATT 2 cut(s) 86, 189
Tru1I TTAA 2 cut(s) 84, 285
Tru9I TTAA 2 cut(s) 84, 285
TscAI CASTG 3 cut(s) 160, 211, 237
TspDTI ATGAA 2 cut(s) 8, 498
TspRI CASTG 3 cut(s) 160, 211, 237
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.