Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16101528 .. 16102136

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGAAAATTGCTTCCGGGTTCATCAGAAATACAGCTAGTATTGGAGGGAATTTGGTGATGGCACAGAGAAAATGTTTTCCTTCAGATATTGCTACAATACTTCTTGCTGTGGATTCAGAGGTAGATATAATGAATGGTGCTAGATCTGAGACGATTATGTTGGAGGATTTTCTGAAAAGGCCTCCACTGGATCCGAAAAGTGTACTTTTAAGTGTTAAAATCCCAAACTGGGAAGCAGTTAGAAAAGGTTCTCCAGAAACCAACACCATGTTGCTTTTTGAAACCTATCGAGCTCCACCAAGACCCCTAGGAAGCTCATTGGCTTATTTGAATGCTGCCTTCCTAGCTGAAGTATCATTTTGGAAGATATTCAATGGAATTATGGTGGATCATTGTCGTTTGGCTTTTGGTGCTTATGGAACTAAACATGCAATTAGAGCAAGAAAGGTTGAGGAATTTCTAACTGGGAAAGTGCTGAGTCCTGGTGTTCTATATGACGCTATTAAATTAGTTAGGGATGTTGTGGTTCCTGAAGAGGAACTACGAGCCCTGCTTACAGGTCAAGCTTGGCTGCTGGTTTTCTTTTCGAGTTCTTTAGCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

203

Amino Acids

22.31

Weight (kDa)

8.55

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_5	PF00941	1 - 78	4.1e-20	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	96 - 184	5.3e-13	CO dehydrogenase flavoprotein C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	188, 201, 399
AcsI	RAATTY	2 cut(s)	52, 458
AcuI	CTGAAG	3 cut(s)	69, 372, 555
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	284, 334, 376
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	5 cut(s)	38, 296, 318, 350, 569
AluI	AGCT	5 cut(s)	38, 296, 318, 350, 569
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	188, 201, 399
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	338, 574
ApoI	RAATTY	2 cut(s)	52, 458
Asp700I	GAANNNNTTC	2 cut(s)	250, 371
AspA2I	CCTAGG	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	298, 553
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	325, 561
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	4 cut(s)	39, 144, 311, 347
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	2 cut(s)	339, 575
BlnI	CCTAGG	1 cut(s)	310
BlsI	GCNGC	2 cut(s)	340, 576
Bme1390I	CCNGG	2 cut(s)	19, 486
BmiI	GGNNCC	2 cut(s)	195, 531
BmrFI	CCNGG	2 cut(s)	19, 486
BmrI	ACTGGG	2 cut(s)	241, 477
BmuI	ACTGGG	2 cut(s)	241, 477
BpmI	CTGGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	3 cut(s)	195, 236, 472
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	141, 470
BseNI	ACTGG	3 cut(s)	195, 236, 472
BseXI	GCAGC	2 cut(s)	325, 561
BshFI	GGCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	298, 553
Bsp143I	GATC	3 cut(s)	146, 193, 391
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	2 cut(s)	142, 471
BspLI	GGNNCC	2 cut(s)	195, 531
BspPI	GGATC	3 cut(s)	188, 201, 399
BsrI	ACTGG	3 cut(s)	195, 236, 472
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	146, 193, 391
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	150, 479
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	3 cut(s)	149, 196, 394
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	146, 193, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 413, 440
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	17, 484
BstV1I	GCAGC	2 cut(s)	325, 561
BstX2I	RGATCY	2 cut(s)	146, 193
BstYI	RGATCY	2 cut(s)	146, 193
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	188
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	2 cut(s)	271, 431
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	150, 479
DpnI	GATC	3 cut(s)	148, 195, 393
DpnII	GATC	3 cut(s)	146, 193, 391
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	184
Eco24I	GRGCYC	2 cut(s)	298, 553
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	3 cut(s)	69, 372, 555
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	298, 553
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	274, 434
FaiI	YATR	8 cut(s)	131, 161, 272, 386, 420, 432, 496, 498
FatI	CATG	2 cut(s)	270, 430
Fnu4HI	GCNGC	2 cut(s)	339, 575
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	2 cut(s)	298, 553
Fsp4HI	GCNGC	2 cut(s)	339, 575
FspBI	CTAG	4 cut(s)	39, 144, 311, 347
GluI	GCNGC	2 cut(s)	339, 575
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	509
Hin1II	CATG	2 cut(s)	274, 434
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	2 cut(s)	116, 481
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	6 cut(s)	29, 88, 121, 151, 177, 198
Hpy188III	TCNNGA	2 cut(s)	257, 533
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	93, 352
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 413, 440
HpyF3I	CTNAG	2 cut(s)	150, 479
Hsp92II	CATG	2 cut(s)	274, 434
Kzo9I	GATC	3 cut(s)	146, 193, 391
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	325, 561
MaeI	CTAG	4 cut(s)	39, 144, 311, 347
MalI	GATC	3 cut(s)	148, 195, 393
MboI	GATC	3 cut(s)	146, 193, 391
MboII	GAAGA	2 cut(s)	379, 548
MflI	RGATCY	2 cut(s)	146, 193
MhlI	GDGCHC	2 cut(s)	298, 553
MluCI	AATT	6 cut(s)	9, 52, 381, 435, 458, 509
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	41, 115, 160, 195, 448, 532
MroXI	GAANNNNTTC	2 cut(s)	250, 371
MseI	TTAA	4 cut(s)	212, 219, 507, 607
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	19, 486
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	347, 413, 440
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	146, 193, 391
NlaIII	CATG	2 cut(s)	274, 434
NlaIV	GGNNCC	2 cut(s)	195, 531
NspI	RCATGY	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	2 cut(s)	250, 371
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	340, 576
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	195, 531
PsuI	RGATCY	2 cut(s)	146, 193
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	212, 219, 507, 607
SatI	GCNGC	2 cut(s)	339, 575
Sau3AI	GATC	3 cut(s)	146, 193, 391
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	2 cut(s)	19, 486
SduI	GDGCHC	2 cut(s)	298, 553
Sse9I	AATT	6 cut(s)	9, 52, 381, 435, 458, 509
SseBI	AGGCCT	1 cut(s)	184
SspMI	CTAG	4 cut(s)	39, 144, 311, 347
SstI	GAGCTC	1 cut(s)	298
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	17, 484
StyI	CCWWGG	1 cut(s)	310
TaqI	TCGA	2 cut(s)	292, 590
TasI	AATT	6 cut(s)	9, 52, 381, 435, 458, 509
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	4 cut(s)	212, 219, 507, 607
Tru9I	TTAA	4 cut(s)	212, 219, 507, 607
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	338, 574
TspDTI	ATGAA	2 cut(s)	13, 149
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	52, 458
XceI	RCATGY	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	310
XmnI	GAANNNNTTC	2 cut(s)	250, 371
XspI	CTAG	4 cut(s)	39, 144, 311, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.