pycom11g15800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
16747974 .. 16748674
701 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGCCCCGGAGCAATGTAGTCATTCTAACCGACCAGGCATCTGATCTTTCACTACCCAGAAACAAGGTTACTGTGTATCCAATTCAAGGCGATTATTCGCGAGACAAGTTGATGCTTCAAAGAATCAGGTCTTACATCGTTTACATCTTCACCGACGCAGATATAGCAGTTGTTGATGATCTAGGACACATATTTCGCGAATATCCGAATTTTCATCTGGCGTTGACATTCCATAACTACAAAGCACAACCTCTAAAATCAGGATTTATAGCAGTGAGGGGCACTGCTGGTGGAATTTTAAGGTGCGTTGTCACGTTATCTGCGTACTCAGAGTTGAGCATGTTGTTTAATACTAATAGTTACGTCATCTGTTTTGCGGTTATTGTTTACCAGAAAACAGAGATGAAATGTTTATTTGCGACCGTTTTTTACATTTCACATACTGCAAACATTGCCTGGGTAGTGACGTCACACCCATGGTTTGATGCAAAGAAGTTTACCCCAGCCCAAGCTTTCATAGAGGATATTGGCGGTGCTTCGGTGTTGTTTTTACCGTGTGCTGTCTGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.36

Weight (kDa)

8.25

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 470
AccII CGCG 2 cut(s) 100, 198
AciI CCGC 2 cut(s) 377, 531
AcsI RAATTY 2 cut(s) 208, 294
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 86, 119
AjnI CCWGG 2 cut(s) 33, 455
AluBI AGCT 1 cut(s) 512
AluI AGCT 1 cut(s) 512
Alw26I GTCTC 1 cut(s) 96
ApoI RAATTY 2 cut(s) 208, 294
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 35, 457
BciVI GTATCC 1 cut(s) 87
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 87
Bme1390I CCNGG 3 cut(s) 7, 35, 457
BmrFI CCNGG 3 cut(s) 7, 35, 457
BmsI GCATC 3 cut(s) 47, 102, 475
BpuMI CCSGG 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 5, 456, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse3DI GCAATG 2 cut(s) 19, 450
BseBI CCWGG 2 cut(s) 35, 457
BseDI CCNNGG 3 cut(s) 5, 456, 476
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 2 cut(s) 19, 450
BseMII CTCAG 1 cut(s) 342
BseSI GKGCMC 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 502
Bsh1236I CGCG 2 cut(s) 100, 198
Bsh1285I CGRYCG 1 cut(s) 423
BsiEI CGRYCG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 43, 178
Bsp19I CCATGG 1 cut(s) 476
Bsp68I TCGCGA 2 cut(s) 100, 198
BspACI CCGC 2 cut(s) 377, 531
BspCNI CTCAG 1 cut(s) 341
BspFNI CGCG 2 cut(s) 100, 198
BsrDI GCAATG 2 cut(s) 19, 450
BssECI CCNNGG 3 cut(s) 5, 456, 476
BssMI GATC 2 cut(s) 43, 178
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 35, 457
Bst4CI ACNGT 3 cut(s) 73, 424, 555
BstACI GRCGYC 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 452
BstDEI CTNAG 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 476
BstFNI CGCG 2 cut(s) 100, 198
BstKTI GATC 2 cut(s) 46, 181
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 43, 178
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 2 cut(s) 164, 452
BstNI CCWGG 2 cut(s) 35, 457
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 5, 33, 455
BstSLI GKGCMC 1 cut(s) 284
BstUI CGCG 2 cut(s) 100, 198
BsuI GTATCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 476
BtsI GCAGTG 2 cut(s) 279, 282
BtsIMutI CAGTG 2 cut(s) 279, 282
BtuMI TCGCGA 2 cut(s) 100, 198
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 340, 477
CviJI RGCY 2 cut(s) 506, 512
CviKI_1 RGCY 2 cut(s) 506, 512
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 328
DpnI GATC 2 cut(s) 45, 180
DpnII GATC 2 cut(s) 43, 178
Eco130I CCWWGG 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 33, 455
EcoT14I CCWWGG 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 2 cut(s) 343, 480
FaiI YATR 8 cut(s) 164, 191, 234, 269, 341, 441, 478, 518
FatI CATG 2 cut(s) 339, 476
FspBI CTAG 1 cut(s) 182
GsaI CCCAGC 1 cut(s) 506
HapII CCGG 1 cut(s) 7
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 2 cut(s) 343, 480
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 1 cut(s) 123
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 4 cut(s) 142, 225, 388, 498
Hpy188I TCNGA 3 cut(s) 43, 207, 331
Hpy188III TCNNGA 3 cut(s) 99, 197, 261
Hpy8I GTNNAC 4 cut(s) 142, 225, 388, 498
Hpy99I CGWCG 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 73, 424, 555
HpyCH4IV ACGT 3 cut(s) 314, 363, 467
HpyCH4V TGCA 3 cut(s) 446, 488, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 452
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 3 cut(s) 314, 363, 467
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 2 cut(s) 343, 480
Kzo9I GATC 2 cut(s) 43, 178
LmnI GCTCC 1 cut(s) 9
LweI GCATC 3 cut(s) 47, 102, 475
MaeI CTAG 1 cut(s) 182
MaeII ACGT 3 cut(s) 314, 363, 467
MaeIII GTNAC 5 cut(s) 67, 310, 359, 463, 468
MalI GATC 2 cut(s) 45, 180
MboI GATC 2 cut(s) 43, 178
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 3 cut(s) 81, 208, 294
MnlI CCTC 3 cut(s) 261, 270, 514
MseI TTAA 2 cut(s) 299, 348
MslI CAYNNNNRTG 1 cut(s) 475
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 3 cut(s) 7, 35, 457
MvaI CCWGG 2 cut(s) 35, 457
MvnI CGCG 2 cut(s) 100, 198
MwoI GCNNNNNNNGC 2 cut(s) 164, 452
NciI CCSGG 1 cut(s) 7
NcoI CCATGG 1 cut(s) 476
NdeII GATC 2 cut(s) 43, 178
NlaIII CATG 2 cut(s) 343, 480
NmuCI GTSAC 3 cut(s) 310, 463, 468
NruI TCGCGA 2 cut(s) 100, 198
NspI RCATGY 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PfeI GAWTC 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 33, 455
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 33, 455
RruI TCGCGA 2 cut(s) 100, 198
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 475
SaqAI TTAA 2 cut(s) 299, 348
Sau3AI GATC 2 cut(s) 43, 178
ScrFI CCNGG 3 cut(s) 7, 35, 457
SduI GDGCHC 1 cut(s) 284
SetI ASST 8 cut(s) 69, 131, 253, 305, 317, 366, 470, 514
SfaNI GCATC 3 cut(s) 47, 102, 475
SmiMI CAYNNNNRTG 1 cut(s) 475
Sse9I AATT 3 cut(s) 81, 208, 294
SsiI CCGC 2 cut(s) 377, 531
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 5, 33, 455
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 3 cut(s) 73, 424, 555
TaiI ACGT 3 cut(s) 317, 366, 470
TasI AATT 3 cut(s) 81, 208, 294
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 299, 348
Tru9I TTAA 2 cut(s) 299, 348
TscAI CASTG 2 cut(s) 279, 289
TseFI GTSAC 3 cut(s) 310, 463, 468
Tsp45I GTSAC 3 cut(s) 310, 463, 468
TspDTI ATGAA 3 cut(s) 203, 419, 505
TspRI CASTG 2 cut(s) 279, 289
XapI RAATTY 2 cut(s) 208, 294
XceI RCATGY 1 cut(s) 343
XspI CTAG 1 cut(s) 182
ZraI GACGTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.