pycom11g16480

beta-mannosidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
18074372 .. 18074980
609 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGGAAGAAAAGGAGAGTCATGTCGATGAAGTTCTAATAAGCCCATCGGGCGGGTTGATTGATGAGGAATCATTTGAACAAAGGTTGAGGTTGACAGAGGATCTTGGTCTGGATTATTCTCAATTGTCAGAGTTTGTTGAAGACGAACACATGTCACAATCATCAGATTCAAAGGAGGAGCTTGGTGATTCTTCACAAGACAAAAAAGAAACCTTCGATGTTTTTGATCGCTTTAACGATGTGTTTCACAATCTCTTCATTGATACAACCATGGAAACAAGGAAGACGTTGGATGAGGTACCTTTTCAGTCGCATCATAAAGCAGATTTAGACGCTGTGGAACAAGTGGAATACAAGGATACTGGAAAAAACAAGAAACTGTTAAAGTACAGCAGGAGGAAAAGGTTGGCTTGTGTATCAGTCAAACGTGAAGCACAAAAGCGAACTACCAAATTCATGTCAAATATGAAAGTTTCTTTGGTGCCACTGAAAAGGTCTTTATTTCATGAAAGGAATACTGGGAAAGTCAATGTTAGCAAGCTTGTGGGTCAAAACAAGGGAGAAAAGAAAATTCAAAGGGGCATTGTTAGATTTAATGAAGATAATTAG

Protein Analysis

203

Amino Acids

23.48

Weight (kDa)

5.93

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 2 cut(s) 298, 481
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 452, 570
AfaI GTAC 2 cut(s) 300, 389
AfiI CCNNNNNNNGG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 4 cut(s) 77, 140, 171, 575
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 2 cut(s) 181, 541
AluI AGCT 2 cut(s) 181, 541
AlwI GGATC 1 cut(s) 108
ApoI RAATTY 2 cut(s) 452, 570
Asp718I GGTACC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 197
BanI GGYRCC 2 cut(s) 298, 481
BbsI GAAGAC 2 cut(s) 147, 290
BccI CCATC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 352
BfuI GTATCC 1 cut(s) 352
BglI GCCNNNNNGGC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 300, 483
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 528
BpiI GAAGAC 2 cut(s) 147, 290
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 367, 523
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 367, 523
BseRI GAGGAG 1 cut(s) 191
BshNI GGYRCC 2 cut(s) 298, 481
BslI CCNNNNNNNGG 1 cut(s) 50
Bsp143I GATC 2 cut(s) 100, 226
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 300, 483
BspPI GGATC 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 298, 481
BsrI ACTGG 2 cut(s) 367, 523
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 100, 226
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 381
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 2 cut(s) 103, 229
BstMBI GATC 2 cut(s) 100, 226
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 154
BstV2I GAAGAC 2 cut(s) 147, 290
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 539
CciI TCATGA 1 cut(s) 505
CseI GACGC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 299, 388
CviAII CATG 5 cut(s) 20, 151, 271, 457, 506
CviJI RGCY 4 cut(s) 42, 181, 410, 541
CviKI_1 RGCY 4 cut(s) 42, 181, 410, 541
CviQI GTAC 2 cut(s) 299, 388
DpnI GATC 2 cut(s) 102, 228
DpnII GATC 2 cut(s) 100, 226
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 5 cut(s) 23, 154, 274, 460, 509
FaiI YATR 7 cut(s) 21, 152, 272, 318, 458, 467, 507
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FatI CATG 5 cut(s) 19, 150, 270, 456, 505
FauI CCCGC 1 cut(s) 44
FokI GGATG 1 cut(s) 305
HgaI GACGC 1 cut(s) 341
Hin1II CATG 5 cut(s) 23, 154, 274, 460, 509
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 4 cut(s) 16, 68, 167, 188
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 130, 166
Hpy188III TCNNGA 2 cut(s) 110, 506
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 381
HpyCH4IV ACGT 2 cut(s) 287, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 287, 427
Hsp92II CATG 5 cut(s) 23, 154, 274, 460, 509
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 100, 226
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 95, 348, 379, 504
LweI GCATC 1 cut(s) 322
MaeII ACGT 2 cut(s) 287, 427
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 102, 228
MboI GATC 2 cut(s) 100, 226
MboII GAAGA 5 cut(s) 17, 152, 183, 247, 295
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 1 cut(s) 100
MluCI AATT 4 cut(s) 122, 452, 570, 604
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 6 cut(s) 58, 81, 91, 169, 289, 390
MseI TTAA 3 cut(s) 234, 383, 594
MslI CAYNNNNRTG 1 cut(s) 24
MunI CAATTG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 48
NcoI CCATGG 1 cut(s) 270
NdeII GATC 2 cut(s) 100, 226
NlaIII CATG 5 cut(s) 23, 154, 274, 460, 509
NlaIV GGNNCC 2 cut(s) 300, 483
NmuCI GTSAC 1 cut(s) 153
NspI RCATGY 1 cut(s) 154
PagI TCATGA 1 cut(s) 505
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 3 cut(s) 68, 167, 188
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PscI ACATGT 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 300, 483
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 2 cut(s) 300, 389
RsaNI GTAC 2 cut(s) 299, 388
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 3 cut(s) 234, 383, 594
Sau3AI GATC 2 cut(s) 100, 226
SchI GAGTC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 4 cut(s) 122, 452, 570, 604
SsiI CCGC 1 cut(s) 51
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 381
TaiI ACGT 2 cut(s) 290, 430
TaqI TCGA 2 cut(s) 24, 216
TasI AATT 4 cut(s) 122, 452, 570, 604
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 3 cut(s) 68, 167, 188
Tru1I TTAA 3 cut(s) 234, 383, 594
Tru9I TTAA 3 cut(s) 234, 383, 594
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 6 cut(s) 42, 247, 445, 482, 494, 522
TspRI CASTG 1 cut(s) 492
XapI RAATTY 2 cut(s) 452, 570
XceI RCATGY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.