pycom11g16710

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
18445431 .. 18447295
1865 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGAAGATGCGAAGAATTGTACTGGAGGCCCCTCAAGTTGGAATGTCGACGCCTAATCAGAAACCAGAGGAGTCAAAAGGTGAGGAAACAACCAGTGAAGCCATGCCAGAGGAACCTCCTGAAGATATTAATCCAATGCCTTCATCCATTGAGGGAGCTGAAACCACAGAGCGAACAAATGGAGAGAAAACCTTGAAGGATGCTGTGAAGCCCAAAAACAAGAGACCTAGGAAAACGGCTCCTCTACTGGTTCAAGCTAGATGGATTTTTTCTCATTGCATATACTTGGTGTTGCAGTTCTCGTTGGAACTCATGGCAGGCAAAAGGAGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000184 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070478 GO:0070481 GO:0070651 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

112

Amino Acids

12.55

Weight (kDa)

8.79

Isoelectric Point (pI)

76.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 196, 254
AluBI AGCT 2 cut(s) 158, 257
AluI AGCT 2 cut(s) 158, 257
Alw26I GTCTC 1 cut(s) 217
AoxI GGCC 1 cut(s) 27
AseI ATTAAT 1 cut(s) 129
AspA2I CCTAGG 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 227
BccI CCATC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 228, 258
BlnI CCTAGG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 3 cut(s) 30, 114, 240
BmsI GCATC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 27, 93, 252
Bse3DI GCAATG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 143, 205
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 27, 93, 252
BseRI GAGGAG 2 cut(s) 83, 231
BshFI GGCC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 217
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 3 cut(s) 30, 114, 240
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 3 cut(s) 27, 93, 252
BssECI CCNNGG 1 cut(s) 227
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 319
BstF5I GGATG 2 cut(s) 143, 205
BstMAI GTCTC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 143, 205
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 28
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 103, 313
CviJI RGCY 6 cut(s) 29, 101, 158, 211, 239, 257
CviKI_1 RGCY 6 cut(s) 29, 101, 158, 211, 239, 257
CviQI GTAC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 106, 316
FaiI YATR 4 cut(s) 104, 281, 283, 314
FatI CATG 2 cut(s) 102, 312
FblI GTMKAC 1 cut(s) 47
FokI GGATG 2 cut(s) 130, 212
FspBI CTAG 2 cut(s) 228, 258
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 29
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 106, 316
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 71
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 150, 190
HpyCH4V TGCA 2 cut(s) 279, 295
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 106, 316
LmnI GCTCC 2 cut(s) 155, 244
LpnPI CCDG 7 cut(s) 8, 78, 106, 120, 132, 233, 303
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 228, 258
MboII GAAGA 3 cut(s) 16, 24, 134
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 19, 285
MnlI CCTC 8 cut(s) 19, 42, 61, 76, 103, 126, 145, 252
MseI TTAA 1 cut(s) 129
NlaIII CATG 2 cut(s) 106, 316
NlaIV GGNNCC 3 cut(s) 30, 114, 240
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PshBI ATTAAT 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 30, 114, 240
PspPI GGNCC 1 cut(s) 28
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 129
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 80
SetI ASST 7 cut(s) 82, 118, 160, 194, 229, 259, 335
SfaNI GCATC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 1 cut(s) 15
SspMI CTAG 2 cut(s) 228, 258
StyI CCWWGG 1 cut(s) 227
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 19
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 17, 132
TspRI CASTG 1 cut(s) 100
VspI ATTAAT 1 cut(s) 129
XmaJI CCTAGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 2 cut(s) 228, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.