Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

19591360 .. 19594444

Gene Structure 3085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCAAGTCGGAAGCCAAACAGAGAGTTTCTTGACTAAACTAGAAACAACTAAAGAAGAACCGACGTCCAAACATCCCTCGTACAACCCCTCGAAAGTTCCGAACAAATTCCATTCCAACACCCAAACAGCCCCTTCTCTCTCCTTCTCTGTTTCCTCCCCCCACGGGCGTCTCCCTCTCCATCCCTCTCTCTCTCCTCAAAACCCTACTCCAATCCCAAACCACAGCAATCACAACCAAAACCTCTCTAAAACCCTAGGAATGTCCTCGATACTGCTTCGGTCCCGTTCAGTCTCCTGGCTGTTAAAGCGCAATCGACGCCTATTGAGCTCCGATGTGGCTTCAACCCCTTCCAAAGAACCGCTCATCGGAGCCCAATCCCTAGTCTCCGATCTCACATCTCCACCTCCACCGCCACCTCAAAGCACTCCCGCTCCGAACGCTTCAAGTAGCAAATCTTGGAACTTTCTCAAGTACTCGCTCATTGGCGCGATCACTGGAGCCACTGCTTGTGTTGGTTATGTCTCGTATGCTTACTCTTTGGAAGAAATCGATGAAAAGACCAAGGCTCTCCGAGCAGCACCTTCAACTATCAGGTTGGCAGATGATGCATCCGCTCTTGAAAAATTTAAAAATTGGGTATACTCTTCTGCAGTTACAGTGCCTGCTAAAGCAGCTGAAGCTTACATTGATGCAAGGAGGAATATTGAAGAACAAATTCGAGGTTATACTGAACCATACGCAGAGAAGCTTCTCCCAGATTTGCATCCCATGGAGAAACATGTTTTTACCCTTGTTCTGGATCGATCCAGGAGACATTACTGTACTCTTATTGGACGCGAGAAAAGGGCTGGCAGACTATCAAAAGACCTGGAGTTGATGCCTTCTTGGAACATCTTGCTCAGTTTTATGAAATCATTGTGTATTCAGACTATTCAAATATGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006464 GO:0006470 GO:0006605 GO:0006626 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017038 GO:0019538 GO:0019866 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036211 GO:0042578 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098796 GO:0098798 GO:0098800 GO:0140096 GO:1901564 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

317

Amino Acids

35.01

Weight (kDa)

9.48

Isoelectric Point (pI)

66.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
AccBSI	CCGCTC	3 cut(s)	364, 434, 617
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	2 cut(s)	491, 840
AciI	CCGC	4 cut(s)	362, 413, 432, 615
AclWI	GGATC	2 cut(s)	801, 810
AcsI	RAATTY	3 cut(s)	107, 626, 717
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	3 cut(s)	65, 169, 319
AfaI	GTAC	3 cut(s)	83, 476, 826
AfiI	CCNNNNNNNGG	3 cut(s)	165, 368, 799
AflIII	ACRYGT	1 cut(s)	781
AgsI	TTSAA	6 cut(s)	345, 447, 588, 623, 710, 938
AjnI	CCWGG	3 cut(s)	296, 809, 870
AluBI	AGCT	4 cut(s)	330, 677, 683, 751
AluI	AGCT	4 cut(s)	330, 677, 683, 751
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	5 cut(s)	176, 298, 391, 529, 808
AlwI	GGATC	2 cut(s)	801, 810
AlwNI	CAGNNNCTG	1 cut(s)	665
ApeKI	GCWGC	2 cut(s)	578, 674
ApoI	RAATTY	3 cut(s)	107, 626, 717
Asp700I	GAANNNNTTC	2 cut(s)	107, 717
AspA2I	CCTAGG	1 cut(s)	256
AspLEI	GCGC	2 cut(s)	312, 491
AspS9I	GGNCC	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	282
AvrII	CCTAGG	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	332, 376
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	590, 686
BccI	CCATC	1 cut(s)	189
BciT130I	CCWGG	3 cut(s)	298, 811, 872
BcoDI	GTCTC	5 cut(s)	176, 298, 391, 529, 808
BfaI	CTAG	3 cut(s)	41, 257, 383
BfmI	CTRYAG	1 cut(s)	651
BisI	GCNGC	2 cut(s)	579, 675
BlnI	CCTAGG	1 cut(s)	256
BlsI	GCNGC	2 cut(s)	580, 676
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	3 cut(s)	298, 811, 872
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	284, 373, 502
BmrFI	CCNGG	3 cut(s)	298, 811, 872
BmsI	GCATC	5 cut(s)	598, 620, 682, 775, 870
BpmI	CTGGAG	2 cut(s)	519, 893
BpuEI	CTTGAG	1 cut(s)	455
Bsa29I	ATCGAT	2 cut(s)	552, 805
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	3 cut(s)	65, 169, 319
BsaJI	CCNNGG	4 cut(s)	163, 256, 564, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 368, 799
Bse1I	ACTGG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	3 cut(s)	298, 811, 872
BseCI	ATCGAT	2 cut(s)	552, 805
BseDI	CCNNGG	4 cut(s)	163, 256, 564, 771
BseGI	GGATG	4 cut(s)	73, 181, 611, 766
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	3 cut(s)	165, 368, 799
BseMII	CTCAG	1 cut(s)	916
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	590, 686
Bsh1236I	CGCG	2 cut(s)	491, 840
BshVI	ATCGAT	2 cut(s)	552, 805
BsiHKAI	GWGCWC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	165, 368, 799
BsmAI	GTCTC	5 cut(s)	176, 298, 391, 529, 808
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	332, 376
Bsp143I	GATC	4 cut(s)	391, 492, 802, 806
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	4 cut(s)	362, 413, 432, 615
BspCNI	CTCAG	1 cut(s)	915
BspDI	ATCGAT	2 cut(s)	552, 805
BspFNI	CGCG	2 cut(s)	491, 840
BspLI	GGNNCC	3 cut(s)	284, 373, 502
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	2 cut(s)	801, 810
BsrBI	CCGCTC	3 cut(s)	364, 434, 617
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	4 cut(s)	163, 256, 564, 771
BssMI	GATC	4 cut(s)	391, 492, 802, 806
BssNAI	GTATAC	1 cut(s)	643
BssNI	GRCGYC	3 cut(s)	65, 169, 319
BssT1I	CCWWGG	3 cut(s)	256, 564, 771
Bst1107I	GTATAC	1 cut(s)	643
Bst2UI	CCWGG	3 cut(s)	298, 811, 872
Bst4CI	ACNGT	2 cut(s)	661, 824
Bst6I	CTCTTC	1 cut(s)	652
BstACI	GRCGYC	3 cut(s)	65, 169, 319
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	666, 853
BstDEI	CTNAG	1 cut(s)	902
BstDSI	CCRYGG	2 cut(s)	163, 771
BstF5I	GGATG	4 cut(s)	73, 181, 611, 766
BstFNI	CGCG	2 cut(s)	491, 840
BstHHI	GCGC	2 cut(s)	312, 491
BstKTI	GATC	4 cut(s)	394, 495, 805, 809
BstMAI	GTCTC	5 cut(s)	176, 298, 391, 529, 808
BstMBI	GATC	4 cut(s)	391, 492, 802, 806
BstMWI	GCNNNNNNNGC	8 cut(s)	307, 318, 327, 440, 575, 608, 674, 680
BstNI	CCWGG	3 cut(s)	298, 811, 872
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	3 cut(s)	296, 809, 870
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	2 cut(s)	491, 840
BstV1I	GCAGC	2 cut(s)	590, 686
BstZ17I	GTATAC	1 cut(s)	643
Bsu15I	ATCGAT	2 cut(s)	552, 805
BsuTUI	ATCGAT	2 cut(s)	552, 805
BtgI	CCRYGG	2 cut(s)	163, 771
BtsCI	GGATG	4 cut(s)	73, 181, 611, 766
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	3 cut(s)	495, 504, 666
Cac8I	GCNNGC	2 cut(s)	666, 853
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	2 cut(s)	312, 491
Cfr13I	GGNCC	1 cut(s)	282
ClaI	ATCGAT	2 cut(s)	552, 805
CseI	GACGC	3 cut(s)	158, 327, 846
Csp6I	GTAC	3 cut(s)	82, 475, 825
CviAII	CATG	2 cut(s)	772, 782
CviQI	GTAC	3 cut(s)	82, 475, 825
DdeI	CTNAG	1 cut(s)	902
DpnI	GATC	4 cut(s)	393, 494, 804, 808
DpnII	GATC	4 cut(s)	391, 492, 802, 806
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	3 cut(s)	256, 564, 771
Eco24I	GRGCYC	2 cut(s)	332, 376
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	699
EcoICRI	GAGCTC	1 cut(s)	330
EcoRII	CCWGG	3 cut(s)	296, 809, 870
EcoT14I	CCWWGG	3 cut(s)	256, 564, 771
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	2 cut(s)	332, 376
ErhI	CCWWGG	3 cut(s)	256, 564, 771
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	2 cut(s)	775, 785
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	771, 781
FauI	CCCGC	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	2 cut(s)	579, 675
FokI	GGATG	4 cut(s)	60, 168, 598, 753
FriOI	GRGCYC	2 cut(s)	332, 376
Fsp4HI	GCNGC	2 cut(s)	579, 675
FspBI	CTAG	3 cut(s)	41, 257, 383
GlaI	GCGC	2 cut(s)	311, 490
GluI	GCNGC	2 cut(s)	579, 675
GsuI	CTGGAG	2 cut(s)	519, 893
HgaI	GACGC	3 cut(s)	158, 327, 846
HhaI	GCGC	2 cut(s)	312, 491
Hin1I	GRCGYC	3 cut(s)	65, 169, 319
Hin1II	CATG	2 cut(s)	775, 785
Hin6I	GCGC	2 cut(s)	310, 489
HinP1I	GCGC	2 cut(s)	310, 489
HindIII	AAGCTT	2 cut(s)	681, 749
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	8 cut(s)	11, 102, 334, 371, 391, 438, 575, 930
Hpy188III	TCNNGA	3 cut(s)	31, 620, 800
Hpy8I	GTNNAC	1 cut(s)	643
Hpy99I	CGWCG	2 cut(s)	67, 321
HpyAV	CCTTC	5 cut(s)	144, 154, 360, 594, 894
HpyCH4III	ACNGT	2 cut(s)	661, 824
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	5 cut(s)	4, 611, 653, 695, 766
HpyF10VI	GCNNNNNNNGC	8 cut(s)	307, 318, 327, 440, 575, 608, 674, 680
HpyF3I	CTNAG	1 cut(s)	902
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	3 cut(s)	65, 169, 319
Hsp92II	CATG	2 cut(s)	775, 785
HspAI	GCGC	2 cut(s)	310, 489
Kzo9I	GATC	4 cut(s)	391, 492, 802, 806
LmnI	GCTCC	4 cut(s)	335, 371, 439, 500
Lsp1109I	GCAGC	2 cut(s)	590, 686
LweI	GCATC	5 cut(s)	598, 620, 682, 775, 870
MaeI	CTAG	3 cut(s)	41, 257, 383
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	4 cut(s)	393, 494, 804, 808
MbiI	CCGCTC	3 cut(s)	364, 434, 617
MboI	GATC	4 cut(s)	391, 492, 802, 806
MboII	GAAGA	4 cut(s)	68, 557, 639, 722
MhlI	GDGCHC	2 cut(s)	332, 376
MluCI	AATT	4 cut(s)	107, 626, 634, 717
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	613
MroXI	GAANNNNTTC	2 cut(s)	107, 717
MseI	TTAA	2 cut(s)	305, 630
MspA1I	CMGCKG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	298, 811, 872
MvaI	CCWGG	3 cut(s)	298, 811, 872
MvnI	CGCG	2 cut(s)	491, 840
MwoI	GCNNNNNNNGC	8 cut(s)	307, 318, 327, 440, 575, 608, 674, 680
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	4 cut(s)	391, 492, 802, 806
NlaIII	CATG	2 cut(s)	775, 785
NlaIV	GGNNCC	3 cut(s)	284, 373, 502
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	785
PciI	ACATGT	1 cut(s)	781
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PdmI	GAANNNNTTC	2 cut(s)	107, 717
PfoI	TCCNGGA	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	580, 676
PscI	ACATGT	1 cut(s)	781
Psp124BI	GAGCTC	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	296, 809, 870
PspGI	CCWGG	3 cut(s)	296, 809, 870
PspN4I	GGNNCC	3 cut(s)	284, 373, 502
PspPI	GGNCC	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	3 cut(s)	83, 476, 826
RsaNI	GTAC	3 cut(s)	82, 475, 825
SacI	GAGCTC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	305, 630
SatI	GCNGC	2 cut(s)	579, 675
Sau3AI	GATC	4 cut(s)	391, 492, 802, 806
Sau96I	GGNCC	1 cut(s)	282
ScaI	AGTACT	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	298, 811, 872
SduI	GDGCHC	2 cut(s)	332, 376
SfaNI	GCATC	5 cut(s)	598, 620, 682, 775, 870
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	4 cut(s)	107, 626, 634, 717
SsiI	CCGC	4 cut(s)	362, 413, 432, 615
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	3 cut(s)	41, 257, 383
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	296, 809, 870
StyI	CCWWGG	3 cut(s)	256, 564, 771
TaaI	ACNGT	2 cut(s)	661, 824
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	6 cut(s)	92, 269, 316, 552, 721, 805
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	4 cut(s)	107, 626, 634, 717
TatI	WGTACW	2 cut(s)	474, 824
Tru1I	TTAA	2 cut(s)	305, 630
Tru9I	TTAA	2 cut(s)	305, 630
TscAI	CASTG	3 cut(s)	502, 511, 666
TseI	GCWGC	2 cut(s)	578, 674
TspDTI	ATGAA	2 cut(s)	570, 926
TspRI	CASTG	3 cut(s)	502, 511, 666
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	3 cut(s)	107, 626, 717
XceI	RCATGY	1 cut(s)	785
XmaJI	CCTAGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	2 cut(s)	107, 717
XspI	CTAG	3 cut(s)	41, 257, 383
ZraI	GACGTC	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.