pycom11g17880

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Reverse (-)
20206157 .. 20206611
455 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGTTTCGATCAGCTGCAATGATCATGGATCTGCATTTCTCGAGCGGTGAACTTGAGGAAATGATTGTCAGCTCAGGTTTTGGCGCCGGTAAGCATATTGGGGCATCTCGTGTGGTGCTTCAGGGCGATGAACTTAGAGATTGGCGCCGGCTTCCCTTCTACACAGCCAGTTTCGGATGGGGAAAGCCAGCATGGGTGAGCATTCGTAGCATCGAATTCAAGAACATGATTGTGTTGATGGATACGAATGATGGCACCGCCATAGAATCCACAGAGAAGCAACTTTCTGTCATACACATGAACACATTAATTGAAACATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

5.52

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 45 - 102 2e-08 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 83, 144, 254
AccBSI CCGCTC 1 cut(s) 45
AciI CCGC 2 cut(s) 45, 258
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 2 cut(s) 84, 145
AgsI TTSAA 2 cut(s) 220, 314
AluBI AGCT 2 cut(s) 14, 72
AluI AGCT 2 cut(s) 14, 72
AlwI GGATC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 215
AseI ATTAAT 1 cut(s) 308
AspLEI GCGC 2 cut(s) 86, 147
AsuHPI GGTGA 2 cut(s) 59, 208
AvaI CYCGRG 1 cut(s) 40
BanI GGYRCC 3 cut(s) 83, 144, 254
BauI CACGAG 1 cut(s) 108
BccI CCATC 3 cut(s) 171, 232, 245
BciVI GTATCC 1 cut(s) 235
BclI TGATCA 1 cut(s) 21
BfaI CTAG 1 cut(s) 322
BfoI RGCGCY 2 cut(s) 87, 148
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 3 cut(s) 85, 146, 256
BmsI GCATC 2 cut(s) 113, 219
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 74
BsaHI GRCGYC 2 cut(s) 84, 145
Bse118I RCCGGY 2 cut(s) 86, 147
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 24
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 168
BshNI GGYRCC 3 cut(s) 83, 144, 254
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 2 cut(s) 87, 148
BsmI GAATGC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 3 cut(s) 8, 21, 28
BspACI CCGC 2 cut(s) 45, 258
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 85, 146, 256
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 3 cut(s) 83, 144, 254
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 86, 147
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 2 cut(s) 86, 147
BssMI GATC 3 cut(s) 8, 21, 28
BssNI GRCGYC 2 cut(s) 84, 145
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
BstACI GRCGYC 2 cut(s) 84, 145
BstC8I GCNNGC 2 cut(s) 149, 189
BstDEI CTNAG 2 cut(s) 73, 134
BstF5I GGATG 1 cut(s) 182
BstH2I RGCGCY 2 cut(s) 87, 148
BstHHI GCGC 2 cut(s) 86, 147
BstKTI GATC 3 cut(s) 11, 24, 31
BstMBI GATC 3 cut(s) 8, 21, 28
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuI GTATCC 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 149, 189
CfoI GCGC 2 cut(s) 86, 147
Cfr10I RCCGGY 2 cut(s) 86, 147
CviAII CATG 4 cut(s) 25, 192, 226, 298
CviJI RGCY 5 cut(s) 14, 72, 151, 167, 187
CviKI_1 RGCY 5 cut(s) 14, 72, 151, 167, 187
DdeI CTNAG 2 cut(s) 73, 134
DinI GGCGCC 2 cut(s) 85, 146
DpnI GATC 3 cut(s) 10, 23, 30
DpnII GATC 3 cut(s) 8, 21, 28
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 215
EgeI GGCGCC 2 cut(s) 85, 146
EheI GGCGCC 2 cut(s) 85, 146
FaeI CATG 4 cut(s) 28, 195, 229, 301
FaiI YATR 7 cut(s) 26, 96, 193, 227, 263, 293, 299
FatI CATG 4 cut(s) 24, 191, 225, 297
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 322
GlaI GCGC 2 cut(s) 85, 146
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 2 cut(s) 87, 148
HapII CCGG 2 cut(s) 87, 148
HhaI GCGC 2 cut(s) 86, 147
Hin1I GRCGYC 2 cut(s) 84, 145
Hin1II CATG 4 cut(s) 28, 195, 229, 301
Hin6I GCGC 2 cut(s) 84, 145
HinP1I GCGC 2 cut(s) 84, 145
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 87, 148
HphI GGTGA 2 cut(s) 59, 208
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 40, 220
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 17, 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 2 cut(s) 73, 134
Hsp92I GRCGYC 2 cut(s) 84, 145
Hsp92II CATG 4 cut(s) 28, 195, 229, 301
HspAI GCGC 2 cut(s) 84, 145
KasI GGCGCC 2 cut(s) 83, 144
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 8, 21, 28
LpnPI CCDG 6 cut(s) 60, 100, 107, 161, 181, 201
LweI GCATC 2 cut(s) 113, 219
MaeI CTAG 1 cut(s) 322
MalI GATC 3 cut(s) 10, 23, 30
MbiI CCGCTC 1 cut(s) 45
MboI GATC 3 cut(s) 8, 21, 28
MflI RGATCY 1 cut(s) 28
MluCI AATT 2 cut(s) 215, 309
Mly113I GGCGCC 2 cut(s) 84, 145
MnlI CCTC 1 cut(s) 49
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 2 cut(s) 230, 296
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 87, 148
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 149
NarI GGCGCC 2 cut(s) 84, 145
NdeII GATC 3 cut(s) 8, 21, 28
NgoMIV GCCGGC 1 cut(s) 147
NlaIII CATG 4 cut(s) 28, 195, 229, 301
NlaIV GGNNCC 3 cut(s) 85, 146, 256
PaeR7I CTCGAG 1 cut(s) 40
PctI GAATGC 1 cut(s) 201
PdiI GCCGGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 16
PluTI GGCGCC 2 cut(s) 87, 148
PshBI ATTAAT 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 85, 146, 256
PsuI RGATCY 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 230, 296
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 8, 21, 28
SetI ASST 3 cut(s) 16, 74, 79
SfaNI GCATC 2 cut(s) 113, 219
SfoI GGCGCC 2 cut(s) 85, 146
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 230, 296
SmlI CTYRAG 2 cut(s) 40, 53
SmoI CTYRAG 2 cut(s) 40, 53
Sse9I AATT 2 cut(s) 215, 309
SsiI CCGC 2 cut(s) 45, 258
SspDI GGCGCC 2 cut(s) 83, 144
SspMI CTAG 1 cut(s) 322
TaqI TCGA 3 cut(s) 7, 41, 213
TasI AATT 2 cut(s) 215, 309
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 144, 314
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.