Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20327885 .. 20328942

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGAGTTTTAAGGATAAGAGCCTGTCAAATGGGATTTTCTTCCTTGAGCTTCTCAGTGCTGTAGAGCCTAGAGTTGTTAATTGGAACCTTGTTACTAAGGGTGAAAGTGCTGATGAAAAGAAGTTGAACGCTACATACATAGTCAGCGTTGCCCGGAAGCTTGGCTGTTCCATATTCTTGTTGCCTGAGGACATCATGGAGGTGAATCAGAAGATGCTTTTGACCCTAACAGCCAGCATTATGTTTTGGAGTCTGCAACAGCCGGTTGATGACACGGAAAGATTGCTGTCCCCTGTTGATGCTTCACCGGCGACATCCATCAGCGGAGAGGATGAAAGCTCCTCTTCCCTTGGTGGTGAGATTTCAAACTTAAGCATTGACGACACTGCCTCGGACACTACAGTCTCTTCACAGGTTGAGAATGACGGCAGCAACGCTCCTCTGGGAGGCGGGATCGGGGTGGAAGGGGAAGGAGGGTGCATAGCTGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

17.48

Weight (kDa)

4.18

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	2 - 82	1.6e-13	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AciI	CCGC	2 cut(s)	327, 453
AclWI	GGATC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	449
AflII	CTTAAG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	130, 369
AluBI	AGCT	4 cut(s)	52, 163, 342, 488
AluI	AGCT	4 cut(s)	52, 163, 342, 488
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	4 cut(s)	116, 217, 300, 371
AxyI	CCTNAGG	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	63, 402
BfrI	CTTAAG	1 cut(s)	373
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	207, 292
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	352, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	2 cut(s)	265, 310
Bse21I	CCTNAGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	352, 393
BseGI	GGATG	2 cut(s)	317, 340
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMII	CTCAG	2 cut(s)	70, 180
BseRI	GAGGAG	2 cut(s)	334, 432
BseXI	GCAGC	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	157, 266, 311
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	456
BspACI	CCGC	2 cut(s)	327, 453
BspCNI	CTCAG	2 cut(s)	69, 181
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	373
BsrFI	RCCGGY	2 cut(s)	265, 310
BssAI	RCCGGY	2 cut(s)	265, 310
BssECI	CCNNGG	2 cut(s)	352, 393
BssMI	GATC	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	2 cut(s)	352, 415
BstAFI	CTTAAG	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	56, 99, 189
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	317, 340
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	63, 402
BstV1I	GCAGC	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	317, 340
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	64, 387
Cac8I	GCNNGC	1 cut(s)	238
Cfr10I	RCCGGY	2 cut(s)	265, 310
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	9 cut(s)	24, 52, 70, 163, 168, 236, 265, 342, 488
CviKI_1	RGCY	9 cut(s)	24, 52, 70, 163, 168, 236, 265, 342, 488
DdeI	CTNAG	3 cut(s)	56, 99, 189
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	352, 415
EarI	CTCTTC	2 cut(s)	352, 415
Eco130I	CCWWGG	1 cut(s)	352
Eco81I	CCTNAGG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	202
FaiI	YATR	6 cut(s)	139, 143, 176, 200, 245, 485
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	446
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	2 cut(s)	304, 347
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	433
HapII	CCGG	3 cut(s)	157, 266, 311
Hin1II	CATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	208, 253
HpaII	CCGG	3 cut(s)	157, 266, 311
HphI	GGTGA	4 cut(s)	116, 217, 300, 371
Hpy188I	TCNGA	2 cut(s)	213, 397
HpyAV	CCTTC	2 cut(s)	461, 467
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	259, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	3 cut(s)	56, 99, 189
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	347, 445
LpnPI	CCDG	9 cut(s)	38, 170, 201, 250, 279, 309, 324, 401, 431
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	2 cut(s)	207, 292
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	4 cut(s)	34, 226, 339, 402
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	8 cut(s)	184, 196, 325, 355, 403, 443, 453, 470
MseI	TTAA	3 cut(s)	12, 81, 374
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	327
MspCI	CTTAAG	1 cut(s)	373
MspI	CCGG	3 cut(s)	157, 266, 311
MspR9I	CCNGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	311
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	434
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	89
PsrI	GAACNNNNNNTAC	2 cut(s)	122, 154
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	3 cut(s)	12, 81, 374
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	1 cut(s)	456
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	157
SetI	ASST	7 cut(s)	54, 93, 165, 207, 344, 420, 490
SfaNI	GCATC	2 cut(s)	207, 292
SfcI	CTRYAG	2 cut(s)	63, 402
SgrAI	CRCCGGYG	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	47, 373
SmoI	CTYRAG	2 cut(s)	47, 373
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	327, 453
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	406
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	12, 81, 374
Tru9I	TTAA	3 cut(s)	12, 81, 374
TscAI	CASTG	2 cut(s)	64, 394
TseI	GCWGC	1 cut(s)	432
TspDTI	ATGAA	2 cut(s)	132, 351
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	2 cut(s)	64, 394
Vha464I	CTTAAG	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	447
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.