pycom11g18220

Pleckstrin homology domain-containing family A member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
20424624 .. 20426158
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1110 bp
ATGGCGGTAAACAACATGAGTTTGCCAACAAGCAGATGCGGATGTAAGCTCCATTATGCTAATTTCCAATGCCAATTCCAATATGAAATTCCATCAGTGCAAGTGCAAATTTCCAATGCGAGTGCCAGTGCAAGATTCCAATGCCAGTACCAGTGCAAGATTCCCATACCAGTGCCATACGATACTTTGACTCAATTCTTGGGTTTAAGGTTGGTCAGACAACAGGTTCGTGGGTTATGTTGCAGCAGCGGTGTGGCGAGTCAAGCTGCAGATCAAGAGCAGATGCAGATGAAGGTGGTCCAAGAAGGAGACGAACTCTATCCTAGATACAAGTCAGACGCCGGAGTACAGGACAATAACGAACGACGAACAATGAACAACGACAATTTGTTTTTTGTTTTTTTTTTTTTACTTCAACGAATTTATCTAAACTGGAACAATCAAATAGCAAAAGACGACAACAAACTAACATGGGACACACAAGAGCAGATTAAATCCCAAAGGATCAAAAACTGCTCTGATACCAAGTTAAATATCAGAGTAATGACACGCCCCGATCCCGATATCCGAGGGACATCGGGATGGCCATGTGCTAGCCGACACTCGAGGGTAACGCGTATAAATTTCGCTGCAACTAACCAAATTAATATATATGCAATTACCAACAATGATAAAGATAGTGATAGTGCATGGCATGTTCAAAGCATACATCTAATTCAGAATACAACGGAAGGTTTCTTATGTCCTGAGGGGGCGCAAAACAAACATGAGTGGACCAAGCTGATATATATATATATATATATATATATATATATATATCATACTGAAACAGTTTTTCTGAAAACCCTAGCATGCCATAAAACCTTCATAAAACATATATCGTATAGTGTGCTACATAGTGGTATCATAGTGACCCATGGTACTACATTTCCCAGCCCGAAGCCAACAACTATATCTCCCAGCCTGAAGCCAACAATTATATCTCTTGACCCGAAAAGCACAAAAAGATTGAATATAATCTTTCCAAAGCATAATACATATATCTCAAAACATCTTCATAGTTCATATATAGTATATAGTCATCCATCATATATACTACAAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GLTP

Protein Analysis

370

Amino Acids

42.56

Weight (kDa)

9.19

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 616
AciI CCGC 3 cut(s) 5, 39, 249
AclWI GGATC 2 cut(s) 512, 551
AcoI YGGCCR 1 cut(s) 584
AcsI RAATTY 4 cut(s) 87, 108, 420, 622
AcuI CTGAAG 1 cut(s) 986
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 149, 348, 922
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 416, 701, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 49, 266, 781
AluI AGCT 3 cut(s) 49, 266, 781
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 2 cut(s) 512, 551
Ama87I CYCGRG 1 cut(s) 604
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 4 cut(s) 243, 246, 266, 629
ApoI RAATTY 4 cut(s) 87, 108, 420, 622
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AseI ATTAAT 1 cut(s) 645
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 2 cut(s) 298, 774
AsuNHI GCTAGC 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 604
AvaII GGWCC 2 cut(s) 298, 774
AxyI CCTNAGG 1 cut(s) 747
BalI TGGCCA 1 cut(s) 586
BbvI GCAGC 4 cut(s) 253, 255, 258, 616
BccI CCATC 3 cut(s) 100, 576, 1093
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 3 cut(s) 324, 594, 848
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 4 cut(s) 244, 247, 267, 630
BlsI GCNGC 4 cut(s) 245, 248, 268, 631
Bme18I GGWCC 2 cut(s) 298, 774
BmeT110I CYCGRG 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 298, 774
BmsI GCATC 2 cut(s) 26, 273
BmtI GCTAGC 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 300, 332
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 568, 916
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bse1I ACTGG 5 cut(s) 126, 145, 151, 170, 437
Bse21I CCTNAGG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 568, 916
BseGI GGATG 3 cut(s) 47, 587, 1081
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 5 cut(s) 126, 145, 151, 170, 437
BseXI GCAGC 4 cut(s) 253, 255, 258, 616
BseYI CCCAGC 2 cut(s) 932, 959
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 488, 586
BsmAI GTCTC 1 cut(s) 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 2 cut(s) 488, 586
BsnI GGCC 1 cut(s) 586
BsoBI CYCGRG 1 cut(s) 604
Bsp143I GATC 3 cut(s) 271, 504, 556
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 3 cut(s) 5, 39, 249
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 1 cut(s) 739
BspFNI CGCG 1 cut(s) 616
BspMAI CTGCAG 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 597
BspPI GGATC 2 cut(s) 512, 551
BsrI ACTGG 5 cut(s) 126, 145, 151, 170, 437
BssECI CCNNGG 2 cut(s) 568, 916
BssMI GATC 3 cut(s) 271, 504, 556
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 916
Bst4CI ACNGT 1 cut(s) 832
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 595, 853
BstDEI CTNAG 1 cut(s) 747
BstDSI CCRYGG 1 cut(s) 916
BstF5I GGATG 3 cut(s) 47, 587, 1081
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 3 cut(s) 274, 507, 559
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 3 cut(s) 271, 504, 556
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNSI RCATGY 2 cut(s) 698, 855
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 4 cut(s) 253, 255, 258, 616
Bsu36I CCTNAGG 1 cut(s) 747
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 3 cut(s) 47, 587, 1081
BtsIMutI CAGTG 4 cut(s) 102, 133, 158, 177
Cac8I GCNNGC 2 cut(s) 595, 853
CfoI GCGC 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 298, 774
CseI GACGC 1 cut(s) 347
Csp6I GTAC 3 cut(s) 148, 347, 921
CviAII CATG 8 cut(s) 16, 471, 588, 690, 695, 767, 852, 917
CviJI RGCY 9 cut(s) 49, 266, 586, 597, 781, 936, 943, 963, 970
CviKI_1 RGCY 9 cut(s) 49, 266, 586, 597, 781, 936, 943, 963, 970
CviQI GTAC 3 cut(s) 148, 347, 921
DdeI CTNAG 1 cut(s) 747
DpnI GATC 3 cut(s) 273, 506, 558
DpnII GATC 3 cut(s) 271, 504, 556
EaeI YGGCCR 1 cut(s) 584
Eco130I CCWWGG 1 cut(s) 916
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 298, 774
Eco57I CTGAAG 1 cut(s) 986
Eco81I CCTNAGG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 604
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 916
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 8 cut(s) 19, 474, 591, 693, 698, 770, 855, 920
FaqI GGGAC 2 cut(s) 488, 586
FatI CATG 8 cut(s) 15, 470, 587, 689, 694, 766, 851, 916
Fnu4HI GCNGC 4 cut(s) 244, 247, 267, 630
FokI GGATG 3 cut(s) 54, 594, 1068
Fsp4HI GCNGC 4 cut(s) 244, 247, 267, 630
FspBI CTAG 3 cut(s) 324, 594, 848
GlaI GCGC 1 cut(s) 756
GluI GCNGC 4 cut(s) 244, 247, 267, 630
GsaI CCCAGC 2 cut(s) 936, 963
HaeIII GGCC 1 cut(s) 586
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 8 cut(s) 19, 474, 591, 693, 698, 770, 855, 920
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HinfI GANTC 4 cut(s) 135, 160, 190, 259
HpaII CCGG 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 10, 774
Hpy188I TCNGA 7 cut(s) 218, 337, 520, 539, 569, 720, 840
Hpy188III TCNNGA 5 cut(s) 275, 560, 579, 746, 986
Hpy8I GTNNAC 2 cut(s) 10, 774
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 4 cut(s) 286, 299, 725, 874
HpyCH4III ACNGT 1 cut(s) 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 747
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 8 cut(s) 19, 474, 591, 693, 698, 770, 855, 920
HspAI GCGC 1 cut(s) 755
Kzo9I GATC 3 cut(s) 271, 504, 556
LmnI GCTCC 1 cut(s) 54
Lsp1109I GCAGC 4 cut(s) 253, 255, 258, 616
LweI GCATC 2 cut(s) 26, 273
MaeI CTAG 3 cut(s) 324, 594, 848
MaeIII GTNAC 2 cut(s) 610, 910
MalI GATC 3 cut(s) 273, 506, 558
MboI GATC 3 cut(s) 271, 504, 556
MboII GAAGA 1 cut(s) 1046
MlsI TGGCCA 1 cut(s) 586
MluI ACGCGT 1 cut(s) 614
MluNI TGGCCA 1 cut(s) 586
MlyI GAGTC 2 cut(s) 184, 268
MnlI CCTC 3 cut(s) 563, 600, 742
Mox20I TGGCCA 1 cut(s) 586
MscI TGGCCA 1 cut(s) 586
MseI TTAA 4 cut(s) 206, 492, 530, 645
MslI CAYNNNNRTG 2 cut(s) 170, 580
Msp20I TGGCCA 1 cut(s) 586
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 916
NdeII GATC 3 cut(s) 271, 504, 556
NheI GCTAGC 1 cut(s) 593
NlaIII CATG 8 cut(s) 19, 474, 591, 693, 698, 770, 855, 920
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 2 cut(s) 698, 855
PaeI GCATGC 1 cut(s) 855
PaeR7I CTCGAG 1 cut(s) 604
PfeI GAWTC 2 cut(s) 135, 160
PkrI GCNGC 4 cut(s) 245, 248, 268, 631
PleI GAGTC 2 cut(s) 184, 267
PpsI GAGTC 2 cut(s) 184, 267
PshBI ATTAAT 1 cut(s) 645
PspFI CCCAGC 2 cut(s) 932, 959
PspPI GGNCC 2 cut(s) 298, 774
PspXI VCTCGAGB 1 cut(s) 604
PstI CTGCAG 1 cut(s) 271
RsaI GTAC 3 cut(s) 149, 348, 922
RsaNI GTAC 3 cut(s) 148, 347, 921
RseI CAYNNNNRTG 2 cut(s) 170, 580
SaqAI TTAA 4 cut(s) 206, 492, 530, 645
SatI GCNGC 4 cut(s) 244, 247, 267, 630
Sau3AI GATC 3 cut(s) 271, 504, 556
Sau96I GGNCC 2 cut(s) 298, 774
SchI GAGTC 2 cut(s) 184, 268
SetI ASST 8 cut(s) 51, 212, 228, 268, 297, 736, 783, 866
SfaNI GCATC 2 cut(s) 26, 273
SfcI CTRYAG 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 604
SinI GGWCC 2 cut(s) 298, 774
SlaI CTCGAG 1 cut(s) 604
SmiMI CAYNNNNRTG 2 cut(s) 170, 580
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
SphI GCATGC 1 cut(s) 855
SsiI CCGC 3 cut(s) 5, 39, 249
SspMI CTAG 3 cut(s) 324, 594, 848
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 1 cut(s) 832
TaqI TCGA 1 cut(s) 605
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 2 cut(s) 135, 160
Tru1I TTAA 4 cut(s) 206, 492, 530, 645
Tru9I TTAA 4 cut(s) 206, 492, 530, 645
TscAI CASTG 4 cut(s) 102, 133, 158, 177
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 4 cut(s) 243, 246, 266, 629
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 6 cut(s) 99, 305, 389, 856, 1046, 1053
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 4 cut(s) 102, 133, 158, 177
VpaK11BI GGWCC 2 cut(s) 298, 774
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 4 cut(s) 87, 108, 420, 622
XceI RCATGY 2 cut(s) 698, 855
XhoI CTCGAG 1 cut(s) 604
XspI CTAG 3 cut(s) 324, 594, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.