pycom11g18280

resistance protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
20476427 .. 20478790
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1653 bp
ATGCACTTATTAAGAGAAATTGTTCACACACACATAAAGTGTGGACTCTGCTATTGGTCTTCTACCCAAAATAAAACCACAAGTAATAATACAATTTCACACAAACCAAATTGTGCTCTTTTTTTTTTTTTTTTTTTTTTTTCAAATCTCACTCACATATCATCATACGCTCTTTCTCTCAAAGTTGCAACTTCTCTCTTTTTCATCTTATATATTTGTTTAAACCTTTTTTATATTTACACACATATTCAACTAGTTCCTAATATGGGAGGGGGACATAATTTAGTGTATTTGAATATTTTTCCAATTGTGCATATGGCTACAACAAGTTGCGAAAAGCAATTCATGCCTATGCTATGCACTATGGGACGGACTCGATTGTCACTGATTTTCCTCCCCCAACAAATAACGATTAAAACAACTAACTCTATCGTTTACAAAAAAAAAAAAAAAAATCTTAATTGTCTTAGTCTTTACTTTTTAATTAAGAAAAAAATGAATGCAGTAGCTAATTTGAACGTGGGTTTTTATACTGTTTTTAGGAGGGTATTTAATGATATTTTGAAAGCCTTACTCATTTGGCCTTCTCACTTTATATGCGGAGATATAGATGAACTAATCCAAGCGTTGTTTTGCATAAATACCAAAAGAACTTGCATCACTAGTCCAGCAAAAAAAAATTTCATTGTGACGGAAAGACGAATAGTACATCAAGTGTTTTTTATATATCCCACGATTTATATAATAACACGTAGTGTACCATCCCATGTGCCGGTCACATTGAAAAATTTCTCCTCTTTTTATTATACAAATATTCGTCTCACTATCGCCCAAGCTATTTTATTCCTTATTTATCCTCTTTTTTCTTCCTTTTCTTCTTCGCATGGGGAAGTTCTAGCAGATTGCATGGGAACCCAAGAGGCACATTCATCTCCTTCAACCCCTGAATGCGTACACGAGGTCTTCCTGAATTTTAGGGGCGAGGGCACCCGCGATGGGTTTACGAAATATTTTTACACTGCTTTGAAAAAGAAAGGAATCAATACATTTCTGGATGACGATAAACTTGAGAGGGGAAAGGCCATTAAACCAGAACTCTTAAAAGCAATTGAGGAATCTAGGTTGGCAGTCGTCATTCTTTCATGTGACTATGCTTCTTCAGCGTGGTGTTTGGATGAGCTTGCCCATATTGGAAAGTGCAATGAAGACAAGCGGCTTCAAATTTATCCGGTTTTCTATTACGTTGAACCATCTGAGGTAAGAAACAGAGAACGACAATGGGAAGGTGAAAAGGTGGAGGGAAGCTTTAAACCATGTATAGAATATCGCCGGATGGCATATTCAGAAAGAATGTGTTTTGATAACAATATATGCCGTGACTTATTCCATAAACTTTACCATATAGCTTTCCAGATTTGTAATTATCTTCTCCTTCTGTATTCCAAAGTGCCCAGGCAATCGATCGGTCAAGCATTCAGAACAGAAAAAATAAGCCATGATGAAATTAACCAATTCGTCTTCTTATATATAATTTGCCCAACAACTAATCCTCCTATCAAAGAGTACTTGTCGGCCAATATATGGACAGATCGTGAAAAAGTCCCAATATATCTTCCTAATTTAAATATAACTCTATTTTCCATAAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

63.93

Weight (kDa)

9.09

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 319 - 423 1.9e-34 TIR domain
TIR_2 PF13676 321 - 417 7.2e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 1 cut(s) 1581
AccII CGCG 1 cut(s) 993
AciI CCGC 3 cut(s) 600, 991, 1213
AcoI YGGCCR 1 cut(s) 1572
AcsI RAATTY 4 cut(s) 679, 787, 970, 1221
AcuI CTGAAG 1 cut(s) 1143
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 4 cut(s) 708, 759, 954, 1565
AfiI CCNNNNNNNGG 4 cut(s) 266, 772, 996, 1581
AflIII ACRYGT 1 cut(s) 749
AhlI ACTAGT 2 cut(s) 253, 662
AjnI CCWGG 1 cut(s) 1451
AluBI AGCT 5 cut(s) 509, 836, 1180, 1305, 1406
AluI AGCT 5 cut(s) 509, 836, 1180, 1305, 1406
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 824
AoxI GGCC 3 cut(s) 581, 1080, 1572
ApoI RAATTY 4 cut(s) 679, 787, 970, 1221
Asp700I GAANNNNTTC 2 cut(s) 21, 788
AsuHPI GGTGA 1 cut(s) 1298
BaeGI GKGCMC 2 cut(s) 989, 1452
BanI GGYRCC 1 cut(s) 986
BauI CACGAG 1 cut(s) 956
BbsI GAAGAC 4 cut(s) 51, 955, 1212, 1510
Bbv12I GWGCWC 1 cut(s) 118
BccI CCATC 4 cut(s) 769, 989, 1258, 1327
BceAI ACGGC 1 cut(s) 1359
BciT130I CCWGG 1 cut(s) 1453
BcoDI GTCTC 1 cut(s) 824
BcuI ACTAGT 2 cut(s) 253, 662
BfaI CTAG 4 cut(s) 254, 663, 896, 1119
BisI GCNGC 1 cut(s) 1214
BlsI GCNGC 1 cut(s) 1215
BmcAI AGTACT 1 cut(s) 1565
Bme1390I CCNGG 1 cut(s) 1453
BmiI GGNNCC 2 cut(s) 913, 988
BmrFI CCNGG 1 cut(s) 1453
BmsI GCATC 1 cut(s) 666
BpiI GAAGAC 4 cut(s) 51, 955, 1212, 1510
BpuEI CTTGAG 1 cut(s) 1088
Bsa29I ATCGAT 1 cut(s) 1460
BsaAI YACGTR 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 1451
BsaWI WCCGGW 1 cut(s) 1228
BsaXI ACNNNNNCTCC 2 cut(s) 1534, 1564
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 772, 996, 1581
Bse118I RCCGGY 1 cut(s) 772
Bse3DI GCAATG 1 cut(s) 1207
BseBI CCWGG 1 cut(s) 1453
BseCI ATCGAT 1 cut(s) 1460
BseDI CCNNGG 1 cut(s) 1451
BseGI GGATG 4 cut(s) 761, 1060, 1180, 1338
BseLI CCNNNNNNNGG 4 cut(s) 266, 772, 996, 1581
BseMI GCAATG 1 cut(s) 1207
BseMII CTCAG 1 cut(s) 1245
BseRI GAGGAG 1 cut(s) 784
BseSI GKGCMC 2 cut(s) 989, 1452
Bsh1236I CGCG 1 cut(s) 993
Bsh1285I CGRYCG 1 cut(s) 1464
BshFI GGCC 3 cut(s) 583, 1082, 1574
BshNI GGYRCC 1 cut(s) 986
BshVI ATCGAT 1 cut(s) 1460
BsiEI CGRYCG 1 cut(s) 1464
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 3 cut(s) 773, 1229, 1330
BslFI GGGAC 3 cut(s) 288, 381, 1586
BslI CCNNNNNNNGG 4 cut(s) 266, 772, 996, 1581
BsmAI GTCTC 1 cut(s) 824
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 3 cut(s) 288, 381, 1586
BsmI GAATGC 3 cut(s) 505, 953, 1472
BsnI GGCC 3 cut(s) 583, 1082, 1574
Bsp1286I GDGCHC 3 cut(s) 118, 989, 1452
Bsp143I GATC 2 cut(s) 1461, 1588
BspACI CCGC 3 cut(s) 600, 991, 1213
BspANI GGCC 3 cut(s) 583, 1082, 1574
BspCNI CTCAG 1 cut(s) 1246
BspDI ATCGAT 1 cut(s) 1460
BspFNI CGCG 1 cut(s) 993
BspLI GGNNCC 2 cut(s) 913, 988
BspT107I GGYRCC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 1207
BsrFI RCCGGY 1 cut(s) 772
BssAI RCCGGY 1 cut(s) 772
BssECI CCNNGG 1 cut(s) 1451
BssMI GATC 2 cut(s) 1461, 1588
BssSI CACGAG 1 cut(s) 956
Bst2BI CACGAG 1 cut(s) 956
Bst2UI CCWGG 1 cut(s) 1453
Bst4CI ACNGT 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 1 cut(s) 1182
BstDEI CTNAG 2 cut(s) 467, 1254
BstF5I GGATG 4 cut(s) 761, 1060, 1180, 1338
BstFNI CGCG 1 cut(s) 993
BstKTI GATC 2 cut(s) 1464, 1591
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 2 cut(s) 1461, 1588
BstMCI CGRYCG 1 cut(s) 1464
BstMWI GCNNNNNNNGC 2 cut(s) 346, 1160
BstNI CCWGG 1 cut(s) 1453
BstSCI CCNGG 1 cut(s) 1451
BstSLI GKGCMC 2 cut(s) 989, 1452
BstUI CGCG 1 cut(s) 993
BstV2I GAAGAC 4 cut(s) 51, 955, 1212, 1510
Bsu15I ATCGAT 1 cut(s) 1460
BsuRI GGCC 3 cut(s) 583, 1082, 1574
BsuTUI ATCGAT 1 cut(s) 1460
BtgZI GCGATG 1 cut(s) 1008
BtsCI GGATG 4 cut(s) 761, 1060, 1180, 1338
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 2 cut(s) 383, 1017
Cac8I GCNNGC 1 cut(s) 1182
Cfr10I RCCGGY 1 cut(s) 772
ClaI ATCGAT 1 cut(s) 1460
Csp6I GTAC 4 cut(s) 707, 758, 953, 1564
CviAII CATG 7 cut(s) 346, 767, 884, 907, 1143, 1314, 1496
CviQI GTAC 4 cut(s) 707, 758, 953, 1564
DdeI CTNAG 2 cut(s) 467, 1254
DpnI GATC 2 cut(s) 1463, 1590
DpnII GATC 2 cut(s) 1461, 1588
DraI TTTAAA 3 cut(s) 222, 1309, 1623
DraIII CACNNNGTG 1 cut(s) 755
DrdI GACNNNNNNGTC 1 cut(s) 379
DseDI GACNNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 1572
Eco57I CTGAAG 1 cut(s) 1143
EcoRII CCWGG 1 cut(s) 1451
Esp3I CGTCTC 1 cut(s) 824
FaeI CATG 7 cut(s) 349, 770, 887, 910, 1146, 1317, 1499
FaqI GGGAC 3 cut(s) 288, 381, 1586
FatI CATG 7 cut(s) 345, 766, 883, 906, 1142, 1313, 1495
FauI CCCGC 1 cut(s) 998
FauNDI CATATG 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 1214
FokI GGATG 4 cut(s) 748, 1067, 1187, 1345
Fsp4HI GCNGC 1 cut(s) 1214
FspBI CTAG 4 cut(s) 254, 663, 896, 1119
GluI GCNGC 1 cut(s) 1214
HaeIII GGCC 3 cut(s) 583, 1082, 1574
HapII CCGG 3 cut(s) 773, 1229, 1330
Hin1II CATG 7 cut(s) 349, 770, 887, 910, 1146, 1317, 1499
HindIII AAGCTT 1 cut(s) 1303
HinfI GANTC 4 cut(s) 45, 373, 1038, 1115
HpaII CCGG 3 cut(s) 773, 1229, 1330
HphI GGTGA 1 cut(s) 1298
Hpy166II GTNNAC 6 cut(s) 25, 44, 436, 758, 955, 1002
Hpy188I TCNGA 3 cut(s) 1255, 1345, 1478
Hpy188III TCNNGA 4 cut(s) 967, 1052, 1411, 1592
Hpy8I GTNNAC 6 cut(s) 25, 44, 436, 758, 955, 1002
HpyAV CCTTC 4 cut(s) 594, 945, 1277, 1442
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 3 cut(s) 519, 751, 1242
HpyCH4V TGCA 9 cut(s) 4, 188, 313, 360, 503, 636, 657, 906, 1200
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 1160
HpyF3I CTNAG 2 cut(s) 467, 1254
HpySE526I ACGT 3 cut(s) 519, 751, 1242
Hsp92II CATG 7 cut(s) 349, 770, 887, 910, 1146, 1317, 1499
Kzo9I GATC 2 cut(s) 1461, 1588
LweI GCATC 1 cut(s) 666
MaeI CTAG 4 cut(s) 254, 663, 896, 1119
MaeII ACGT 3 cut(s) 519, 751, 1242
MaeIII GTNAC 5 cut(s) 381, 688, 775, 1145, 1376
MalI GATC 2 cut(s) 1463, 1590
MboI GATC 2 cut(s) 1461, 1588
MfeI CAATTG 2 cut(s) 306, 1107
MhlI GDGCHC 3 cut(s) 118, 989, 1452
MlyI GAGTC 2 cut(s) 39, 367
MroXI GAANNNNTTC 2 cut(s) 21, 788
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 3 cut(s) 773, 1229, 1330
MspR9I CCNGG 1 cut(s) 1453
MssI GTTTAAAC 1 cut(s) 222
MunI CAATTG 2 cut(s) 306, 1107
Mva1269I GAATGC 3 cut(s) 505, 953, 1472
MvaI CCWGG 1 cut(s) 1453
MvnI CGCG 1 cut(s) 993
MwoI GCNNNNNNNGC 2 cut(s) 346, 1160
NdeI CATATG 1 cut(s) 315
NdeII GATC 2 cut(s) 1461, 1588
NlaIII CATG 7 cut(s) 349, 770, 887, 910, 1146, 1317, 1499
NlaIV GGNNCC 2 cut(s) 913, 988
NmuCI GTSAC 5 cut(s) 381, 688, 775, 1145, 1376
PacI TTAATTAA 1 cut(s) 486
PctI GAATGC 3 cut(s) 505, 953, 1472
PdmI GAANNNNTTC 2 cut(s) 21, 788
PfeI GAWTC 2 cut(s) 1038, 1115
PflMI CCANNNNNTGG 1 cut(s) 1581
PkrI GCNGC 1 cut(s) 1215
Ple19I CGATCG 1 cut(s) 1464
PleI GAGTC 2 cut(s) 39, 367
PmeI GTTTAAAC 1 cut(s) 222
PpsI GAGTC 2 cut(s) 39, 367
Ppu21I YACGTR 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 1451
PspGI CCWGG 1 cut(s) 1451
PspN4I GGNNCC 2 cut(s) 913, 988
PvuI CGATCG 1 cut(s) 1464
RsaI GTAC 4 cut(s) 708, 759, 954, 1565
RsaNI GTAC 4 cut(s) 707, 758, 953, 1564
RseI CAYNNNNRTG 1 cut(s) 350
SatI GCNGC 1 cut(s) 1214
Sau3AI GATC 2 cut(s) 1461, 1588
ScaI AGTACT 1 cut(s) 1565
SchI GAGTC 2 cut(s) 39, 367
ScrFI CCNGG 1 cut(s) 1453
SduI GDGCHC 3 cut(s) 118, 989, 1452
SfaNI GCATC 1 cut(s) 666
SmiI ATTTAAAT 1 cut(s) 1623
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 1067
SmoI CTYRAG 1 cut(s) 1067
SpeI ACTAGT 2 cut(s) 253, 662
SsiI CCGC 3 cut(s) 600, 991, 1213
SspI AATATT 3 cut(s) 298, 814, 1010
SspMI CTAG 4 cut(s) 254, 663, 896, 1119
StyD4I CCNGG 1 cut(s) 1451
SwaI ATTTAAAT 1 cut(s) 1623
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 3 cut(s) 522, 754, 1245
TaqI TCGA 2 cut(s) 376, 1460
TaqII GACCGA 1 cut(s) 1454
TatI WGTACW 2 cut(s) 706, 1563
TauI GCSGC 1 cut(s) 1216
TfiI GAWTC 2 cut(s) 1038, 1115
TscAI CASTG 2 cut(s) 390, 1024
TseFI GTSAC 5 cut(s) 381, 688, 775, 1145, 1376
Tsp45I GTSAC 5 cut(s) 381, 688, 775, 1145, 1376
TspDTI ATGAA 9 cut(s) 193, 334, 512, 627, 673, 918, 1131, 1218, 1515
TspGWI ACGGA 2 cut(s) 385, 707
TspRI CASTG 2 cut(s) 390, 1024
Van91I CCANNNNNTGG 1 cut(s) 1581
XapI RAATTY 4 cut(s) 679, 787, 970, 1221
XmnI GAANNNNTTC 2 cut(s) 21, 788
XspI CTAG 4 cut(s) 254, 663, 896, 1119
ZrmI AGTACT 1 cut(s) 1565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.