pycom11g18300

Translocase of chloroplast 90

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
20485915 .. 20486747
833 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGTGCAAGGTTTACTTTGAATTTCATTTTAATGTTTATGGACTGTTTGGTTTTAAACTGTATATTCCAGTTTTTGAGTCTTTTACAATGGATTCATCGTCGATTCGTCTTGTTCATCCTCAGACTCTCACACCCTTTCTTTCGTCGCCCCTTCCAATTCAACGGCTCTGTGAATTAGGGTTTTCTGAGCTGCCCCAATCCTTGATTTCGTCTCTTATGGTTCATTACAAAATTCGTATTTTCCAGGTAAAATTCTACGTTCTTTTTTCATACAAATTTAAAGAAGCAAACTTGCCTTTTTTTCCTTTTAATTTTGTCTATATTTTCAGCCTTATATTATGGTTGAATCAGATTTATAAAAAAAGGTATTTTGCAGGAAGGATGAACAACCTTAAAGATTGGATTTCTTCACAGTTAGTATCCATGCCTCTGGTTTCGCCTCGGCCATTGTCCGGTAGTGATAGTTTCTTTAGGGAGGAACCCTCCAATGAAGAATTTGTTGCATTCATAGAGAATATAGTGAAAGTTCCATTTGCCTTTTGA

Protein Analysis

181

Amino Acids

21.29

Weight (kDa)

9.06

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AcoI YGGCCR 1 cut(s) 443
AcsI RAATTY 5 cut(s) 20, 231, 251, 275, 494
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 3 cut(s) 20, 161, 346
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 216
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 5 cut(s) 20, 231, 251, 275, 494
BbvI GCAGC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 245
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 216
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BsaJI CCNNGG 1 cut(s) 440
BsaWI WCCGGW 1 cut(s) 452
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 440
BseGI GGATG 2 cut(s) 115, 387
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 134, 177
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 1 cut(s) 445
BsiSI CCGG 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 216
BsmBI CGTCTC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 1 cut(s) 445
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 2 cut(s) 133, 178
BspLI GGNNCC 1 cut(s) 480
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 3 cut(s) 45, 60, 414
BstDEI CTNAG 2 cut(s) 120, 186
BstF5I GGATG 2 cut(s) 115, 387
BstMAI GTCTC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 430
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 1 cut(s) 445
BtsCI GGATG 2 cut(s) 115, 387
CviAII CATG 1 cut(s) 424
CviJI RGCY 4 cut(s) 166, 190, 330, 445
CviKI_1 RGCY 4 cut(s) 166, 190, 330, 445
DdeI CTNAG 2 cut(s) 120, 186
DraI TTTAAA 2 cut(s) 55, 280
EaeI YGGCCR 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 1 cut(s) 427
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 2 cut(s) 102, 394
Fsp4HI GCNGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 445
HapII CCGG 1 cut(s) 453
Hin1II CATG 1 cut(s) 427
HinfI GANTC 5 cut(s) 77, 92, 103, 124, 346
HpaII CCGG 1 cut(s) 453
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 123, 187, 351
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 103, 148
HpyAV CCTTC 2 cut(s) 161, 372
HpyCH4III ACNGT 3 cut(s) 45, 60, 414
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 6, 374, 503
HpyF3I CTNAG 2 cut(s) 120, 186
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 1 cut(s) 427
LpnPI CCDG 6 cut(s) 81, 230, 257, 360, 416, 466
Lsp1109I GCAGC 1 cut(s) 177
MaeII ACGT 1 cut(s) 258
MboII GAAGA 2 cut(s) 399, 503
MluCI AATT 8 cut(s) 20, 156, 173, 231, 251, 275, 310, 494
MlyI GAGTC 2 cut(s) 86, 118
MnlI CCTC 5 cut(s) 129, 438, 450, 469, 493
MseI TTAA 5 cut(s) 30, 54, 279, 309, 393
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 1 cut(s) 245
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 1 cut(s) 480
NmeAIII GCCGAG 1 cut(s) 421
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 3 cut(s) 92, 103, 346
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 2 cut(s) 85, 118
PpsI GAGTC 2 cut(s) 85, 118
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 5 cut(s) 30, 54, 279, 309, 393
SatI GCNGC 1 cut(s) 191
SchI GAGTC 2 cut(s) 86, 118
ScrFI CCNGG 1 cut(s) 245
SetI ASST 6 cut(s) 12, 192, 249, 261, 368, 393
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 8 cut(s) 20, 156, 173, 231, 251, 275, 310, 494
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 45, 60, 414
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 101
TasI AATT 8 cut(s) 20, 156, 173, 231, 251, 275, 310, 494
TfiI GAWTC 3 cut(s) 92, 103, 346
Tru1I TTAA 5 cut(s) 30, 54, 279, 309, 393
Tru9I TTAA 5 cut(s) 30, 54, 279, 309, 393
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 8 cut(s) 14, 84, 104, 212, 258, 398, 496, 504
XapI RAATTY 5 cut(s) 20, 231, 251, 275, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.