Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20617749 .. 20618147

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCTCCCAAGGGAGACAACGTCGTAGTTTCTAGTATAAAGCTCGAGAAGATATTTAGCATGAAAGGAGGCAAAGGAGAGTCCAGCTATGCCAACAATTCCCAAGCCCAGGTAATACGATCGTTGAAATTAGCTTCACCTGCTAAAAGAAACCCTAGACAGTGTGCGACTGAGCTCTCCAGAAGTGCCATTTGTGGCTGTGGATCTTGGATGCTCAAGCGGAAGCAACACTATCTACATAATAGATGTGATCATCGAACACATGACCAAGCGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003002 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0009798 GO:0009943 GO:0009944 GO:0009955 GO:0010252 GO:0016740 GO:0016741 GO:0032259 GO:0032501 GO:0032502 GO:0042592 GO:0042802 GO:0043167 GO:0043169 GO:0046872 GO:0048856 GO:0048878 GO:0051749 GO:0065001 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

93

Amino Acids

10.23

Weight (kDa)

9.97

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	148
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	211
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	43, 87, 134, 175
AluI	AGCT	4 cut(s)	43, 87, 134, 175
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	44
Aor51HI	AGCGCT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	33, 156
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	9, 108
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	9, 108
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	119, 203, 250
BspACI	CCGC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	9, 108
BssMI	GATC	3 cut(s)	119, 203, 250
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	3 cut(s)	122, 206, 253
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	119, 203, 250
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	274
CviAII	CATG	2 cut(s)	61, 263
CviJI	RGCY	7 cut(s)	5, 43, 87, 107, 134, 175, 198
CviKI_1	RGCY	7 cut(s)	5, 43, 87, 107, 134, 175, 198
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	121, 205, 252
DpnII	GATC	3 cut(s)	119, 203, 250
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	177
Eco47III	AGCGCT	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	64, 266
FaiI	YATR	6 cut(s)	38, 62, 90, 240, 264, 277
FatI	CATG	2 cut(s)	60, 262
FbaI	TGATCA	1 cut(s)	250
FokI	GGATG	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	33, 156
GlaI	GCGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	275
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	64, 266
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	46, 180
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	64, 266
HspAI	GCGC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	119, 203, 250
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	95, 97, 122, 153, 193
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	33, 156
MaeII	ACGT	1 cut(s)	21
MalI	GATC	3 cut(s)	121, 205, 252
MboI	GATC	3 cut(s)	119, 203, 250
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	97, 128
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	119, 203, 250
NlaIII	CATG	2 cut(s)	64, 266
NlaIV	GGNNCC	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	119, 203, 250
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	7 cut(s)	24, 45, 89, 114, 136, 142, 177
SfaNI	GCATC	1 cut(s)	201
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	44, 215
SmoI	CTYRAG	2 cut(s)	44, 215
Sse9I	AATT	2 cut(s)	97, 128
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	2 cut(s)	33, 156
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	45, 256
TasI	AATT	2 cut(s)	97, 128
TscAI	CASTG	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	167
Tth111I	GACNNNGTC	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	2 cut(s)	33, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.