pycom11g18650

Small ubiquitin-related modifier

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
20821024 .. 20822066
1043 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGTCGTACAGTTCCATCCTTGAAAAGTGGAAAATTTGGGTGGGGTTGTGTAAGTGGGGTGCAGAGAGAGAAAAAGAGGGGAGGGGAAGGCACAAAGCACCCACTTTGTTTTCATCGAGTCCAAGAGTTGAAGTGGTGGTAGGTCTCTTGGTCTCCGTCTCAGAAGACTTGAACACACATAGTCTCCCTCTGCACTCGGATCACACAGAGAAGCAAGGAAGAATGTCAGGTGTCACGAACCAGGAGGAGGACAAGAAGCCCACCGATCAGTCCGCCCACATCAACCTCAAAGTCAAGGGCCAGGATGGGAACGAAGTGTTTTTCAGGATCAAGAGAAGTACCCAACTGAAGAAGCTTATGAACGCTTACTGCGACAGACAGTCGGTGGAATTCAACTCTATCGCGTTCCTGTTTGATGGCCGTCGTCTGAGAGCCGAGCAGACCCCTGATGAGTTGGAAATGGAAGATGGGGATGAAATAGATGCAATGCTGCATCAAACTGGAGGTTCTTTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

6.08

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 94 - 164 1.5e-25 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 96 - 166 1.9e-15 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 404
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 207, 335
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 33, 389
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 2 cut(s) 8, 340
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 4 cut(s) 23, 131, 172, 394
AhdI GACNNNNNGTC 1 cut(s) 379
AjnI CCWGG 2 cut(s) 240, 300
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 4 cut(s) 149, 157, 163, 188
AlwI GGATC 2 cut(s) 207, 335
AoxI GGCC 2 cut(s) 298, 418
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 2 cut(s) 33, 389
AspS9I GGNCC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 477
BccI CCATC 4 cut(s) 23, 299, 410, 461
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 2 cut(s) 242, 302
BcoDI GTCTC 4 cut(s) 149, 157, 163, 188
BisI GCNGC 1 cut(s) 491
BlsI GCNGC 1 cut(s) 492
Bme1390I CCNGG 2 cut(s) 242, 302
BmeRI GACNNNNNGTC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 242, 302
BmsI GCATC 2 cut(s) 472, 502
BpiI GAAGAC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 149, 157
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 242, 302
BseGI GGATG 3 cut(s) 15, 310, 478
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 174, 419
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 477
BsgI GTGCAG 2 cut(s) 81, 176
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 2 cut(s) 300, 420
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 4 cut(s) 149, 157, 163, 188
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 300, 420
Bso31I GGTCTC 2 cut(s) 149, 157
Bsp143I GATC 3 cut(s) 199, 265, 327
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 300, 420
BspCNI CTCAG 2 cut(s) 173, 420
BspFNI CGCG 1 cut(s) 404
BspPI GGATC 2 cut(s) 207, 335
BspTNI GGTCTC 2 cut(s) 149, 157
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 1 cut(s) 505
BssMI GATC 3 cut(s) 199, 265, 327
Bst2UI CCWGG 2 cut(s) 242, 302
Bst4CI ACNGT 2 cut(s) 11, 381
BstDEI CTNAG 2 cut(s) 160, 428
BstF5I GGATG 3 cut(s) 15, 310, 478
BstFNI CGCG 1 cut(s) 404
BstKTI GATC 3 cut(s) 202, 268, 330
BstMAI GTCTC 4 cut(s) 149, 157, 163, 188
BstMBI GATC 3 cut(s) 199, 265, 327
BstNI CCWGG 2 cut(s) 242, 302
BstSCI CCNGG 2 cut(s) 240, 300
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 2 cut(s) 300, 420
BtsCI GGATG 3 cut(s) 15, 310, 478
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 7, 339
CviJI RGCY 5 cut(s) 259, 300, 355, 420, 434
CviKI_1 RGCY 5 cut(s) 259, 300, 355, 420, 434
CviQI GTAC 2 cut(s) 7, 339
DdeI CTNAG 2 cut(s) 160, 428
DpnI GATC 3 cut(s) 201, 267, 329
DpnII GATC 3 cut(s) 199, 265, 327
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 418
Eam1105I GACNNNNNGTC 1 cut(s) 379
EciI GGCGGA 1 cut(s) 262
Eco31I GGTCTC 2 cut(s) 149, 157
Eco57I CTGAAG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 240, 300
Esp3I CGTCTC 1 cut(s) 163
FaiI YATR 2 cut(s) 180, 359
Fnu4HI GCNGC 1 cut(s) 491
FokI GGATG 3 cut(s) 2, 317, 485
Fsp4HI GCNGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 491
HaeIII GGCC 2 cut(s) 300, 420
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 163, 199, 429
Hpy188III TCNNGA 3 cut(s) 235, 325, 331
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 2 cut(s) 11, 381
HpyCH4V TGCA 4 cut(s) 62, 193, 485, 493
HpyF3I CTNAG 2 cut(s) 160, 428
Kzo9I GATC 3 cut(s) 199, 265, 327
LpnPI CCDG 9 cut(s) 213, 227, 254, 287, 310, 314, 422, 459, 486
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 2 cut(s) 472, 502
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 201, 267, 329
MboI GATC 3 cut(s) 199, 265, 327
MboII GAAGA 4 cut(s) 176, 231, 361, 476
MluCI AATT 2 cut(s) 33, 389
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 7 cut(s) 70, 75, 198, 238, 241, 296, 497
MspR9I CCNGG 2 cut(s) 242, 302
MvaI CCWGG 2 cut(s) 242, 302
MvnI CGCG 1 cut(s) 404
NdeII GATC 3 cut(s) 199, 265, 327
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 240, 300
PspGI CCWGG 2 cut(s) 240, 300
PspPI GGNCC 1 cut(s) 298
RsaI GTAC 2 cut(s) 8, 340
RsaNI GTAC 2 cut(s) 7, 339
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 3 cut(s) 199, 265, 327
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 2 cut(s) 242, 302
SetI ASST 5 cut(s) 145, 232, 288, 357, 508
SfaNI GCATC 2 cut(s) 472, 502
Sse9I AATT 2 cut(s) 33, 389
SsiI CCGC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 240, 300
TaaI ACNGT 2 cut(s) 11, 381
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 33, 389
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 102, 374, 489
TspGWI ACGGA 1 cut(s) 145
XapI RAATTY 2 cut(s) 33, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.