Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21211006 .. 21211707

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTGGAAGGCCATGACATATGGAACTTCCTCCAAGTCATGGATGTTCCTGTCAATCCTTTGCACTCACAAGGTTACATTTCAATCGGGCGTGAGCCATGCACAAGGCCGGTGCTGCCAGGGCAGCATGAAAGGGAGAGAAGATGGTGGTAGGAGGATGCTAAGGCAAAGGAATGTGGCCTCCATAATGGAAATATCGAACAAAAAGCGGCACTGCACCTCAACGGCTATGGAAATGGGATGTCGACCACAAATGGGGAGTGCCAATATCCCAGACATCTTTAACAGCAAGAACTTGGTTTCCTTGAGCAGGACTGGGATAGAGAACCTGGCTAGATTGGAAAACCGAAGTGAACCTTGGCGGCTTGTTCTTTATGCACCATGGTGCCGTTGCTGGGGGGTGAATACTATTCTTTTCTATGTTGAATTAGCTGAGAATCTGGCAGAAGCAGGGGTAAAGGTGGGTAAGTTCAGGGCTGACGGGGAACACAAGGAATATGCACAGCGAGAACTGAAGTTGGGGAGCTTCCCAACAATACTCTTCTTCCCCAAACACTCATCAAAGCCCGTCAAGTATCCATCGGAGAAGAGGGATGTAGCATCGTTGTTGGCCCATGTGAATGCCCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

211

Amino Acids

23.78

Weight (kDa)

9.81

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	2 cut(s)	208, 361
AcuI	CTGAAG	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	39, 254, 309, 394
AgsI	TTSAA	2 cut(s)	83, 425
AjnI	CCWGG	2 cut(s)	117, 327
AjuI	GAANNNNNNNTTGG	2 cut(s)	340, 372
AleI	CACNNNNGTG	1 cut(s)	382
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	431, 525
AluI	AGCT	2 cut(s)	431, 525
AoxI	GGCC	4 cut(s)	9, 106, 177, 609
ApeKI	GCWGC	2 cut(s)	114, 123
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	101, 135
BccI	CCATC	2 cut(s)	137, 586
BceAI	ACGGC	2 cut(s)	240, 372
BciT130I	CCWGG	2 cut(s)	119, 329
BciVI	GTATCC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	585
BisI	GCNGC	4 cut(s)	115, 124, 209, 362
BlsI	GCNGC	4 cut(s)	116, 125, 210, 363
Bme1390I	CCNGG	2 cut(s)	119, 329
BmgT120I	GGNCC	1 cut(s)	610
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	119, 329
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	147, 608
BmuI	ACTGGG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	325
BsaJI	CCNNGG	3 cut(s)	118, 356, 380
BsaWI	WCCGGW	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 254, 309, 394
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	119, 329
BseDI	CCNNGG	3 cut(s)	118, 356, 380
BseGI	GGATG	4 cut(s)	48, 162, 245, 598
BseLI	CCNNNNNNNGG	4 cut(s)	39, 254, 309, 394
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	101, 135
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	11, 108, 179, 611
BshNI	GGYRCC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	109, 628
BslI	CCNNNNNNNGG	4 cut(s)	39, 254, 309, 394
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	11, 108, 179, 611
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	2 cut(s)	208, 361
BspANI	GGCC	4 cut(s)	11, 108, 179, 611
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	118, 356, 380
BssT1I	CCWWGG	2 cut(s)	356, 380
Bst2UI	CCWGG	2 cut(s)	119, 329
Bst6I	CTCTTC	2 cut(s)	545, 581
BstDEI	CTNAG	2 cut(s)	161, 432
BstDSI	CCRYGG	1 cut(s)	380
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	4 cut(s)	48, 162, 245, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 120, 123
BstNI	CCWGG	2 cut(s)	119, 329
BstSCI	CCNGG	2 cut(s)	117, 327
BstV1I	GCAGC	2 cut(s)	101, 135
BsuI	GTATCC	1 cut(s)	585
BsuRI	GGCC	4 cut(s)	11, 108, 179, 611
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	48, 162, 245, 598
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	610
CviAII	CATG	6 cut(s)	13, 39, 98, 127, 381, 614
DdeI	CTNAG	2 cut(s)	161, 432
Eam1104I	CTCTTC	2 cut(s)	545, 581
EarI	CTCTTC	2 cut(s)	545, 581
Eco130I	CCWWGG	2 cut(s)	356, 380
Eco57I	CTGAAG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	117, 327
EcoT14I	CCWWGG	2 cut(s)	356, 380
ErhI	CCWWGG	2 cut(s)	356, 380
FaeI	CATG	6 cut(s)	16, 42, 101, 130, 384, 617
FalI	AAGNNNNNCTT	2 cut(s)	340, 372
FatI	CATG	6 cut(s)	12, 38, 97, 126, 380, 613
FauNDI	CATATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	115, 124, 209, 362
FokI	GGATG	4 cut(s)	55, 169, 252, 605
Fsp4HI	GCNGC	4 cut(s)	115, 124, 209, 362
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	115, 124, 209, 362
GsaI	CCCAGC	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	11, 108, 179, 611
HapII	CCGG	2 cut(s)	109, 628
Hin1II	CATG	6 cut(s)	16, 42, 101, 130, 384, 617
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	109, 628
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	245, 353
Hpy188I	TCNGA	1 cut(s)	583
Hpy8I	GTNNAC	2 cut(s)	245, 353
HpyCH4V	TGCA	5 cut(s)	63, 101, 216, 377, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 120, 123
HpyF3I	CTNAG	2 cut(s)	161, 432
Hsp92II	CATG	6 cut(s)	16, 42, 101, 130, 384, 617
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	2 cut(s)	101, 135
LweI	GCATC	2 cut(s)	147, 608
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	4 cut(s)	152, 532, 535, 598
MluCI	AATT	1 cut(s)	425
MnlI	CCTC	5 cut(s)	40, 147, 190, 229, 582
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	382, 618
MspI	CCGG	2 cut(s)	109, 628
MspR9I	CCNGG	2 cut(s)	119, 329
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	119, 329
MwoI	GCNNNNNNNGC	3 cut(s)	114, 120, 123
NcoI	CCATGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	19
NlaIII	CATG	6 cut(s)	16, 42, 101, 130, 384, 617
NlaIV	GGNNCC	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	382
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	116, 125, 210, 363
Psp6I	CCWGG	2 cut(s)	117, 327
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	2 cut(s)	117, 327
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	610
RseI	CAYNNNNRTG	2 cut(s)	382, 618
SalI	GTCGAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	115, 124, 209, 362
Sau96I	GGNCC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	119, 329
SetI	ASST	7 cut(s)	75, 221, 330, 358, 433, 462, 527
SfaNI	GCATC	2 cut(s)	147, 608
SmiMI	CAYNNNNRTG	2 cut(s)	382, 618
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	2 cut(s)	208, 361
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	117, 327
StyI	CCWWGG	2 cut(s)	356, 380
TaqI	TCGA	2 cut(s)	197, 244
TasI	AATT	1 cut(s)	425
TauI	GCSGC	2 cut(s)	211, 364
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	2 cut(s)	114, 123
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.