Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21224958 .. 21229645

Gene Structure 4688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGATCAAGTATGGCAGCTCGGGCAGTACCCCATGACGATGTGCTAGAATGGGTACAGAAGGATAGTCGTCGTTTCCTGCGTGCTAATATCAGAGTTAGTGATCTTGATCGCACCATTAAGTTTTACACAGAACTTTTTGGATTGAAAGTATTGAGTAGAAAAGATTTCCCAGAAGAAAAATACTCAAATGCAATCGTTGGGTTTGGACCTGAAGAATCTCACTTTGTGATAGGGCTCACATGGCATCACAACGCAACGGACAAGCTAGACATCGGAACAGCCTTTAGTCACTTTGGAATTGCAACTCAAGATATTTATAACACGGTTGAAAAAGTTCGAGCCAGTGGCGGTGAGATCACTCGTGAACCCGGGCCCCTCGTAGGGGGGGGTACCGTTTACGCCTTCATGAACGATCCCGACGGCTACAGTTTCGAGCTCCTCCAGAGGCCGCCAACTCCAGAACCACTTTCTCATATATGTCTTAATGTTAATGATATAAATCGGTCTATTGAGTTCTACAACAAGCATCCAGAACACATATTTACAAAATTAAAAATAGTAGCAGAGCAAAAGAAGCTCTACATGTTAAAATGTAAATATGTTAAACAGTTAAAGTCTGATTTAGGCCAATTTGGCATGCCCCTCAAACTTCTCAATGAACAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009628 GO:0009651 GO:0009987 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0032787 GO:0042180 GO:0042182 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044877 GO:0046185 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

224

Amino Acids

25.37

Weight (kDa)

7.1

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	27 - 147	2.8e-21	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	31 - 136	8.3e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AciI	CCGC	2 cut(s)	351, 452
AclWI	GGATC	2 cut(s)	13, 410
AcuI	CTGAAG	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	3 cut(s)	30, 57, 394
AfiI	CCNNNNNNNGG	3 cut(s)	383, 384, 385
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	2 cut(s)	148, 332
AluBI	AGCT	4 cut(s)	20, 268, 439, 580
AluI	AGCT	4 cut(s)	20, 268, 439, 580
Alw21I	GWGCWC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	13, 410
Ama87I	CYCGRG	2 cut(s)	21, 371
AoxI	GGCC	3 cut(s)	374, 449, 628
ApaI	GGGCCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	336
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	209, 374, 375
AsuC2I	CCSGG	2 cut(s)	372, 373
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	2 cut(s)	21, 371
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	3 cut(s)	240, 378, 441
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	439
BcnI	CCSGG	2 cut(s)	372, 373
BfaI	CTAG	2 cut(s)	47, 269
BfmI	CTRYAG	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	636
BisI	GCNGC	2 cut(s)	18, 452
BlsI	GCNGC	2 cut(s)	19, 453
Bme1390I	CCNGG	2 cut(s)	372, 373
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	2 cut(s)	21, 371
BmgT120I	GGNCC	3 cut(s)	209, 374, 375
BmiI	GGNNCC	3 cut(s)	376, 377, 394
BmrFI	CCNGG	2 cut(s)	372, 373
BmsI	GCATC	2 cut(s)	256, 538
BpmI	CTGGAG	2 cut(s)	428, 444
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	372, 373
BsaBI	GATNNNNATC	2 cut(s)	108, 501
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 384, 385
Bse1I	ACTGG	1 cut(s)	345
Bse8I	GATNNNNATC	2 cut(s)	108, 501
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	529
BseJI	GATNNNNATC	2 cut(s)	108, 501
BseLI	CCNNNNNNNGG	3 cut(s)	383, 384, 385
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	29
BshFI	GGCC	3 cut(s)	376, 451, 630
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	441
BsiHKCI	CYCGRG	2 cut(s)	21, 371
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	383, 384, 385
BsnI	GGCC	3 cut(s)	376, 451, 630
BsoBI	CYCGRG	2 cut(s)	21, 371
Bsp120I	GGGCCC	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	240, 378, 441
Bsp143I	GATC	5 cut(s)	5, 103, 109, 357, 415
BspACI	CCGC	2 cut(s)	351, 452
BspANI	GGCC	3 cut(s)	376, 451, 630
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	376, 377, 394
BspPI	GGATC	2 cut(s)	13, 410
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	5 cut(s)	5, 103, 109, 357, 415
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	4 cut(s)	328, 397, 431, 612
BstC8I	GCNNGC	2 cut(s)	84, 641
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	5 cut(s)	8, 106, 112, 360, 418
BstMBI	GATC	5 cut(s)	5, 103, 109, 357, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 244, 577, 636
BstNSI	RCATGY	2 cut(s)	589, 643
BstSCI	CCNGG	2 cut(s)	370, 371
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	376, 451, 630
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	84, 641
CciI	TCATGA	1 cut(s)	408
Cfr13I	GGNCC	3 cut(s)	209, 374, 375
Cfr9I	CCCGGG	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	29, 56, 393
CviAII	CATG	5 cut(s)	35, 243, 409, 586, 640
CviQI	GTAC	3 cut(s)	29, 56, 393
DpnI	GATC	5 cut(s)	7, 105, 111, 359, 417
DpnII	GATC	5 cut(s)	5, 103, 109, 357, 415
DraIII	CACNNNGTG	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	3 cut(s)	240, 378, 441
Eco47I	GGWCC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	2 cut(s)	21, 371
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	375
EcoT38I	GRGCYC	3 cut(s)	240, 378, 441
FaeI	CATG	5 cut(s)	38, 246, 412, 589, 643
FatI	CATG	5 cut(s)	34, 242, 408, 585, 639
Fnu4HI	GCNGC	2 cut(s)	18, 452
FokI	GGATG	1 cut(s)	516
FriOI	GRGCYC	3 cut(s)	240, 378, 441
Fsp4HI	GCNGC	2 cut(s)	18, 452
FspBI	CTAG	2 cut(s)	47, 269
GluI	GCNGC	2 cut(s)	18, 452
GsuI	CTGGAG	2 cut(s)	428, 444
HaeIII	GGCC	3 cut(s)	376, 451, 630
HapII	CCGG	1 cut(s)	372
Hin1II	CATG	5 cut(s)	38, 246, 412, 589, 643
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	368, 400
Hpy188I	TCNGA	3 cut(s)	95, 278, 622
Hpy188III	TCNNGA	8 cut(s)	107, 311, 365, 409, 419, 445, 461, 533
Hpy8I	GTNNAC	2 cut(s)	368, 400
Hpy99I	CGWCG	2 cut(s)	75, 425
HpyAV	CCTTC	2 cut(s)	55, 415
HpyCH4III	ACNGT	4 cut(s)	328, 397, 431, 612
HpyCH4V	TGCA	2 cut(s)	194, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 244, 577, 636
Hsp92II	CATG	5 cut(s)	38, 246, 412, 589, 643
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	5, 103, 109, 357, 415
LmnI	GCTCC	1 cut(s)	444
LpnPI	CCDG	8 cut(s)	92, 186, 225, 358, 385, 458, 474, 546
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	256, 538
MaeI	CTAG	2 cut(s)	47, 269
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	7, 105, 111, 359, 417
MboI	GATC	5 cut(s)	5, 103, 109, 357, 415
MboII	GAAGA	2 cut(s)	188, 227
MhlI	GDGCHC	3 cut(s)	240, 378, 441
MluCI	AATT	3 cut(s)	300, 551, 632
MnlI	CCTC	4 cut(s)	389, 441, 452, 656
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	7 cut(s)	120, 486, 492, 554, 590, 606, 614
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	372, 373
MwoI	GCNNNNNNNGC	4 cut(s)	23, 244, 577, 636
NciI	CCSGG	2 cut(s)	372, 373
NdeII	GATC	5 cut(s)	5, 103, 109, 357, 415
NlaIII	CATG	5 cut(s)	38, 246, 412, 589, 643
NlaIV	GGNNCC	3 cut(s)	376, 377, 394
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	2 cut(s)	589, 643
PaeI	GCATGC	1 cut(s)	643
PagI	TCATGA	1 cut(s)	408
PciI	ACATGT	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	19, 453
PscI	ACATGT	1 cut(s)	585
PsiI	TTATAA	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	376, 377, 394
PspOMI	GGGCCC	1 cut(s)	374
PspPI	GGNCC	3 cut(s)	209, 374, 375
RsaI	GTAC	3 cut(s)	30, 57, 394
RsaNI	GTAC	3 cut(s)	29, 56, 393
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	7 cut(s)	120, 486, 492, 554, 590, 606, 614
SatI	GCNGC	2 cut(s)	18, 452
Sau3AI	GATC	5 cut(s)	5, 103, 109, 357, 415
Sau96I	GGNCC	3 cut(s)	209, 374, 375
ScrFI	CCNGG	2 cut(s)	372, 373
SduI	GDGCHC	3 cut(s)	240, 378, 441
SetI	ASST	5 cut(s)	22, 214, 270, 441, 582
SfaNI	GCATC	2 cut(s)	256, 538
SfcI	CTRYAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	209
SmaI	CCCGGG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
SphI	GCATGC	1 cut(s)	643
Sse9I	AATT	3 cut(s)	300, 551, 632
SsiI	CCGC	2 cut(s)	351, 452
SspMI	CTAG	2 cut(s)	47, 269
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	370, 371
TaaI	ACNGT	4 cut(s)	328, 397, 431, 612
TaqI	TCGA	2 cut(s)	340, 435
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	300, 551, 632
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	7 cut(s)	120, 486, 492, 554, 590, 606, 614
Tru9I	TTAA	7 cut(s)	120, 486, 492, 554, 590, 606, 614
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	397, 425
TspGWI	ACGGA	1 cut(s)	275
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	209
XceI	RCATGY	2 cut(s)	589, 643
XmaI	CCCGGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	47, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.