pycom11g19500

UPF0136 membrane protein At2g26240-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
22029809 .. 22031841
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGCTGACGACAAACACAAAAGTCCCTGCCTGTATAAAAAAAAAATCTTTAATTCGTGAGGGATTGAGGATAAACCAGTGTGGTTTTTTCCCCGAGAATCTGAGAGTTTTCCCGGAAACCCAGTTGGAGAAGATGCACGATTTTTGCTTCACGATCCCCTACGGGTTGGTGCTGATCGGCGGAGGAGTTTTTGGATATTTCAAGAAGGGGAGCACGGCTTCTTTGGCTGGAGGCGCGGGCATCGGATTGCTCCTCACTCTTGCTGGATATATCAGTCTCAAAGCCTTCGAGAAGAAGAAGAACTCGTATCCTGCTCTGATTCTTGAAACGGTTTGTTCTGCCATACTTACGTGGGTCATGGGACAGCGCTATCTGCATACTTTTAAGATCATGCCAGCTGGTGTTGTTGCTGGTATCAGAATAGGAGGGGTAAAAGAAGTCGATAGGAAATGGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.58

Weight (kDa)

9.73

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 50 - 141 1.4e-22 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 180, 236
AclWI GGATC 1 cut(s) 148
AfeI AGCGCT 1 cut(s) 368
AgsI TTSAA 2 cut(s) 202, 326
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 368
AspLEI GCGC 2 cut(s) 236, 369
AsuC2I CCSGG 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 231
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 370
BfuI GTATCC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 123, 249
BmuI ACTGGG 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 351
Bse1I ACTGG 2 cut(s) 76, 121
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 76, 121
BseRI GAGGAG 2 cut(s) 198, 242
Bsh1236I CGCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 8, 375
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 8, 375
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 153, 174, 387
BspACI CCGC 2 cut(s) 180, 236
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 236
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 76, 121
BssMI GATC 3 cut(s) 153, 174, 387
Bst4CI ACNGT 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 238, 396
BstDEI CTNAG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 2 cut(s) 236, 369
BstKTI GATC 3 cut(s) 156, 177, 390
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 3 cut(s) 153, 174, 387
BstMWI GCNNNNNNNGC 3 cut(s) 224, 233, 373
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 236
BsuI GTATCC 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 238, 396
CfoI GCGC 2 cut(s) 236, 369
CviAII CATG 2 cut(s) 358, 391
CviJI RGCY 4 cut(s) 218, 227, 284, 398
CviKI_1 RGCY 4 cut(s) 218, 227, 284, 398
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 155, 176, 389
DpnII GATC 3 cut(s) 153, 174, 387
EciI GGCGGA 1 cut(s) 195
Eco47III AGCGCT 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 92
FaeI CATG 2 cut(s) 361, 394
FaiI YATR 6 cut(s) 35, 270, 344, 359, 378, 392
FaqI GGGAC 2 cut(s) 8, 375
FatI CATG 2 cut(s) 357, 390
FauI CCCGC 1 cut(s) 229
GlaI GCGC 2 cut(s) 235, 368
GsuI CTGGAG 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 370
HapII CCGG 1 cut(s) 113
HhaI GCGC 2 cut(s) 236, 369
Hin1II CATG 2 cut(s) 361, 394
Hin6I GCGC 2 cut(s) 234, 367
HinP1I GCGC 2 cut(s) 234, 367
HinfI GANTC 2 cut(s) 97, 319
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 4 cut(s) 102, 245, 318, 419
Hpy188III TCNNGA 5 cut(s) 56, 151, 202, 289, 323
HpyAV CCTTC 2 cut(s) 199, 295
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 136, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 233, 373
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 2 cut(s) 361, 394
HspAI GCGC 2 cut(s) 234, 367
Kzo9I GATC 3 cut(s) 153, 174, 387
LmnI GCTCC 2 cut(s) 210, 255
LweI GCATC 2 cut(s) 123, 249
MaeII ACGT 1 cut(s) 350
MalI GATC 3 cut(s) 155, 176, 389
MboI GATC 3 cut(s) 153, 174, 387
MboII GAAGA 4 cut(s) 142, 304, 307, 310
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 52, 60, 176, 224, 263, 419
MseI TTAA 2 cut(s) 50, 384
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 224, 233, 373
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 153, 174, 387
NlaIII CATG 2 cut(s) 361, 394
PfeI GAWTC 2 cut(s) 97, 319
PfoI TCCNGGA 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 50, 384
Sau3AI GATC 3 cut(s) 153, 174, 387
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 215
SetI ASST 2 cut(s) 353, 400
SfaNI GCATC 2 cut(s) 123, 249
Sse9I AATT 1 cut(s) 51
SsiI CCGC 2 cut(s) 180, 236
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 288, 441
TasI AATT 1 cut(s) 51
TfiI GAWTC 2 cut(s) 97, 319
Tru1I TTAA 2 cut(s) 50, 384
Tru9I TTAA 2 cut(s) 50, 384
TscAI CASTG 1 cut(s) 83
TspRI CASTG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.