pycom11g19780

disulfide-isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
22296889 .. 22300542
3654 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGATTTCCACCGGCAAGATCAAGTCCGTCGATTTTTATAGGAAAATCCTTAGAGATTTGACAGAAGCATCATTATCGGGTGCAAGACTATCTATTATGGCAGCTCTCGCCATGATGTTTTTATTTGGAATGGTAACCGTCAGCACCTCTACATCTGTTATTGTCAACAAGAGTTCTGATGGTGATTTCTTACTTATTGAATTTAATATCAGTTTTCCTGCACTCCCGTGTGAATTTGCATCTCTTGATGTGAGTGACGTGTTGGGAACAAACAGATTGAATGTTACGAAAACAATTCGCAAGTTCCCCATAGGGACAGATTTAAGACCAACTGGCTCTGAGTTCCACTCAGGACCAGTTTTAGATGGAGATGAGTATTCTGGTGATGGCTCTATTTCTCTAACTGCTCAGAATTTTGAAAAGTTTACTCACCAGCACCCAATTTTGGTGGTTAATTTTTATGCTCCATGGTGCTACTGGAGCAATCGCCTGAAACCTTCATGGGAGAAGACCGCCAAAATAATAAGAGAAAGGTATGATCTAGGAATAGATGGCCGTATACTTATGGCGAAGGTGGATTGTATTGAAGAGGGTGACTTGTGTAGGAGGTATGTTTTAAATTGCTTAATCCTACTTTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

215

Amino Acids

23.92

Weight (kDa)

6.3

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 7 - 92 5e-16 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Thioredoxin PF00085 132 - 205 1.2e-10 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 559
AciI CCGC 1 cut(s) 513
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 200, 233, 412
AfiI CCNNNNNNNGG 1 cut(s) 445
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 4 cut(s) 200, 280, 419, 587
AjiI CACGTC 1 cut(s) 259
AleI CACNNNNGTG 1 cut(s) 226
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 3 cut(s) 200, 233, 412
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 4 cut(s) 194, 395, 422, 605
AvaII GGWCC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 515
BbvI GCAGC 1 cut(s) 113
BccI CCATC 4 cut(s) 173, 359, 380, 545
BceAI ACGGC 1 cut(s) 540
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BfaI CTAG 1 cut(s) 542
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 353
BmsI GCATC 2 cut(s) 77, 248
BpiI GAAGAC 1 cut(s) 515
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 467
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 3 cut(s) 337, 356, 482
BseDI CCNNGG 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 3 cut(s) 330, 363, 422
BseNI ACTGG 3 cut(s) 337, 356, 482
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 555
Bsp143I GATC 2 cut(s) 18, 538
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 1 cut(s) 513
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 3 cut(s) 331, 362, 421
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 3 cut(s) 337, 356, 482
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 467
BssMI GATC 2 cut(s) 18, 538
BssNAI GTATAC 1 cut(s) 560
BssT1I CCWWGG 1 cut(s) 467
Bst1107I GTATAC 1 cut(s) 560
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 582
BstDEI CTNAG 4 cut(s) 50, 339, 349, 408
BstDSI CCRYGG 1 cut(s) 467
BstEII GGTNACC 1 cut(s) 133
BstKTI GATC 2 cut(s) 21, 541
BstMBI GATC 2 cut(s) 18, 538
BstMWI GCNNNNNNNGC 2 cut(s) 107, 480
BstPI GGTNACC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 515
BstZ17I GTATAC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 467
BtrI CACGTC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 353
CspCI CAANNNNNGTGG 2 cut(s) 429, 464
CviAII CATG 3 cut(s) 112, 468, 501
CviJI RGCY 4 cut(s) 104, 336, 390, 555
CviKI_1 RGCY 4 cut(s) 104, 336, 390, 555
DdeI CTNAG 4 cut(s) 50, 339, 349, 408
DpnI GATC 2 cut(s) 20, 540
DpnII GATC 2 cut(s) 18, 538
DraI TTTAAA 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 3 cut(s) 115, 471, 504
FaqI GGGAC 1 cut(s) 328
FatI CATG 3 cut(s) 111, 467, 500
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 542
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 1 cut(s) 555
HapII CCGG 1 cut(s) 12
Hin1II CATG 3 cut(s) 115, 471, 504
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HpaII CCGG 1 cut(s) 12
HphI GGTGA 4 cut(s) 194, 395, 422, 605
Hpy166II GTNNAC 3 cut(s) 166, 426, 560
Hpy188I TCNGA 3 cut(s) 178, 340, 411
Hpy188III TCNNGA 2 cut(s) 245, 351
Hpy8I GTNNAC 3 cut(s) 166, 426, 560
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 507, 565
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 83, 221, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 480
HpyF3I CTNAG 4 cut(s) 50, 339, 349, 408
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 115, 471, 504
Kzo9I GATC 2 cut(s) 18, 538
LmnI GCTCC 2 cut(s) 469, 480
LpnPI CCDG 9 cut(s) 25, 231, 318, 336, 366, 369, 446, 463, 503
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 2 cut(s) 77, 248
MaeI CTAG 1 cut(s) 542
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 4 cut(s) 133, 254, 283, 593
MalI GATC 2 cut(s) 20, 540
MboI GATC 2 cut(s) 18, 538
MboII GAAGA 2 cut(s) 520, 599
MluCI AATT 7 cut(s) 200, 233, 294, 412, 441, 454, 619
MnlI CCTC 3 cut(s) 157, 583, 600
MseI TTAA 5 cut(s) 204, 323, 453, 617, 626
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 107, 480
NcoI CCATGG 1 cut(s) 467
NdeII GATC 2 cut(s) 18, 538
NlaIII CATG 3 cut(s) 115, 471, 504
NmuCI GTSAC 2 cut(s) 254, 593
OliI CACNNNNGTG 1 cut(s) 226
PkrI GCNGC 1 cut(s) 103
PspEI GGTNACC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 5 cut(s) 204, 323, 453, 617, 626
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 18, 538
Sau96I GGNCC 1 cut(s) 353
SetI ASST 7 cut(s) 106, 149, 261, 499, 536, 576, 611
SfaNI GCATC 2 cut(s) 77, 248
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 7 cut(s) 200, 233, 294, 412, 441, 454, 619
SsiI CCGC 1 cut(s) 513
SspMI CTAG 1 cut(s) 542
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 30
TasI AATT 7 cut(s) 200, 233, 294, 412, 441, 454, 619
Tru1I TTAA 5 cut(s) 204, 323, 453, 617, 626
Tru9I TTAA 5 cut(s) 204, 323, 453, 617, 626
TseFI GTSAC 2 cut(s) 254, 593
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 254, 593
TspDTI ATGAA 1 cut(s) 489
TspGWI ACGGA 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 3 cut(s) 200, 233, 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 474
XmiI GTMKAC 1 cut(s) 559
XspI CTAG 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.