pycom11g20740

Double-strand break repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
23870650 .. 23871533
884 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGGTGACTTGTCAAGGGAGGATTTTAGTAATACACTTCGAATACTTGTTGCTACGGATTGCCATCTGGGTTATATGGAGAAGGATGAAGTACGGCGCCATGATTCGTTCCAGGCATTTGATGAGATATGCTCAATAGCACAACAAAAGAATGTGGATTTTTTGCTTCTGGGTGGTGATCTGTTCCATGAGAATAAGCCTTCAAGGTCAACACTAGTTAAGGCCATTGAGATTCTCCGCCGTCATTGCCTCAATGATCAGCCAGTGCAGTTCCAAGTTGTTAGCGACCAGACTGTGAATTTTCCAAATACTTGGTCATGTAAATTATGA

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

5.45

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 13 - 72 5.6e-06 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AciI CCGC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 1 cut(s) 204
AhlI ACTAGT 1 cut(s) 214
AjnI CCWGG 1 cut(s) 111
AoxI GGCC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 298
ArsI GACNNNNNNTTYG 1 cut(s) 299
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 17, 188
AsuII TTCGAA 1 cut(s) 40
BanI GGYRCC 1 cut(s) 96
BccI CCATC 1 cut(s) 72
BceAI ACGGC 2 cut(s) 110, 225
BciT130I CCWGG 1 cut(s) 113
BclI TGATCA 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu14I TTCGAA 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 91
BseJI GATNNNNATC 1 cut(s) 63
BseMI GCAATG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 96
BsnI GGCC 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 178, 256
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 1 cut(s) 263
BssMI GATC 2 cut(s) 178, 256
BssNI GRCGYC 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 40
BstF5I GGATG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 2 cut(s) 181, 259
BstMBI GATC 2 cut(s) 178, 256
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 270
CfoI GCGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 92
CviAII CATG 3 cut(s) 101, 188, 318
CviJI RGCY 3 cut(s) 199, 224, 262
CviKI_1 RGCY 3 cut(s) 199, 224, 262
CviQI GTAC 1 cut(s) 92
DinI GGCGCC 1 cut(s) 98
DpnI GATC 2 cut(s) 180, 258
DpnII GATC 2 cut(s) 178, 256
EciI GGCGGA 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 98
EheI GGCGCC 1 cut(s) 98
FaeI CATG 3 cut(s) 104, 191, 321
FaiI YATR 7 cut(s) 75, 77, 102, 130, 189, 319, 328
FatI CATG 3 cut(s) 100, 187, 317
FbaI TGATCA 1 cut(s) 256
FokI GGATG 1 cut(s) 98
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 100
HaeIII GGCC 1 cut(s) 224
HhaI GCGC 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 3 cut(s) 104, 191, 321
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 2 cut(s) 104, 232
HphI GGTGA 2 cut(s) 17, 188
Hpy166II GTNNAC 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 76, 210
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 104, 191, 321
HspAI GCGC 1 cut(s) 97
KasI GGCGCC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 178, 256
LpnPI CCDG 6 cut(s) 53, 98, 125, 155, 276, 302
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 180, 258
MboI GATC 2 cut(s) 178, 256
MluCI AATT 2 cut(s) 298, 323
Mly113I GGCGCC 1 cut(s) 97
MnlI CCTC 2 cut(s) 13, 260
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 246
NarI GGCGCC 1 cut(s) 97
NdeII GATC 2 cut(s) 178, 256
NlaIII CATG 3 cut(s) 104, 191, 321
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 5
NspV TTCGAA 1 cut(s) 40
PfeI GAWTC 2 cut(s) 104, 232
PluTI GGCGCC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 2 cut(s) 178, 256
ScrFI CCNGG 1 cut(s) 113
SetI ASST 1 cut(s) 209
SfoI GGCGCC 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 40
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 2 cut(s) 298, 323
SsiI CCGC 1 cut(s) 238
SspDI GGCGCC 1 cut(s) 96
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 40
TasI AATT 2 cut(s) 298, 323
TfiI GAWTC 2 cut(s) 104, 232
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 270
XapI RAATTY 1 cut(s) 298
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.