pycom11g20750

Double-strand break repair protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
23872426 .. 23873567
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 489 bp
ATGAGGAAGGGTGCAACATCAGTGGCTCTTTATGGTCTCGGAAATATTAGAGATGAACGGCTCAATAGAATGTTTCAGACACCACATGCTGTACAATGGATGAGACCTGAATCTCAAGAAGGGTTGGAAGTGTCAGACTGGTTCAACATTCTAGTGCTTCATCAGAACAGAGTGAAGACAAACCCAAAAAATGCCATCAATGAGCACTTTTTACCACGCTTCCTAGACTTCGTAGTGTGGGGGCATGAACACGAATGCCTCGTGGACCCTCAGGAAGTTCCGGGGATGGGATTTCACATTACACAACCTGGTTCTTCTGTTGCAACATCACTGATTGACGGAGAATCAAAGCCAAAGCATGTGCTCCTTTTAGAAATTAAGGGGAATCAATACCGTCCAACCAAGATTCCTTTGACGTCAGTGAGGCCTTTTGAGTACACAGAGATTGTATTAAAAGATGAACCTGAAATTGATCCCAATCGATCCTAA

Protein Analysis

163

Amino Acids

18.59

Weight (kDa)

6.16

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 419
AclWI GGATC 2 cut(s) 467, 477
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 2 cut(s) 93, 437
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 207, 366
Alw26I GTCTC 2 cut(s) 41, 97
AlwI GGATC 2 cut(s) 467, 477
AoxI GGCC 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 270
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 207, 366
BccI CCATC 2 cut(s) 203, 280
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 309
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 41, 97
BfaI CTAG 2 cut(s) 152, 224
Bme1390I CCNGG 2 cut(s) 282, 309
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 282, 309
BpiI GAAGAC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 481
BsaBI GATNNNNATC 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 2 cut(s) 41, 97
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 481
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 105, 291
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 143
BshFI GGCC 1 cut(s) 427
BshVI ATCGAT 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 207, 366
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 2 cut(s) 41, 97
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 1 cut(s) 427
Bso31I GGTCTC 2 cut(s) 41, 97
Bsp1286I GDGCHC 2 cut(s) 207, 366
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 472, 482
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 1 cut(s) 283
BspDI ATCGAT 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 2 cut(s) 467, 477
BspTNI GGTCTC 2 cut(s) 41, 97
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 472, 482
BssNI GRCGYC 1 cut(s) 416
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 105, 291
BstKTI GATC 2 cut(s) 475, 485
BstMAI GTCTC 2 cut(s) 41, 97
BstMBI GATC 2 cut(s) 472, 482
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 2 cut(s) 89, 362
BstSCI CCNGG 2 cut(s) 280, 307
BstV2I GAAGAC 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 481
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 1 cut(s) 427
BsuTUI ATCGAT 1 cut(s) 481
BtsCI GGATG 2 cut(s) 105, 291
BtsIMutI CAGTG 3 cut(s) 27, 329, 426
Cfr13I GGNCC 1 cut(s) 265
ClaI ATCGAT 1 cut(s) 481
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 2 cut(s) 92, 436
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 3 cut(s) 86, 245, 359
CviJI RGCY 4 cut(s) 26, 61, 352, 427
CviKI_1 RGCY 4 cut(s) 26, 61, 352, 427
CviQI GTAC 2 cut(s) 92, 436
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 474, 484
DpnII GATC 2 cut(s) 472, 482
Eco147I AGGCCT 1 cut(s) 427
Eco31I GGTCTC 2 cut(s) 41, 97
Eco47I GGWCC 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 307
FaeI CATG 3 cut(s) 89, 248, 362
FaiI YATR 4 cut(s) 33, 87, 246, 360
FatI CATG 3 cut(s) 85, 244, 358
FokI GGATG 2 cut(s) 112, 298
FspBI CTAG 2 cut(s) 152, 224
HaeIII GGCC 1 cut(s) 427
HapII CCGG 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 3 cut(s) 89, 248, 362
HinfI GANTC 4 cut(s) 110, 344, 385, 406
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 265, 438
Hpy188I TCNGA 4 cut(s) 41, 78, 136, 165
Hpy188III TCNNGA 2 cut(s) 116, 272
Hpy8I GTNNAC 2 cut(s) 265, 438
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 14, 323
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 416
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 3 cut(s) 89, 248, 362
Kzo9I GATC 2 cut(s) 472, 482
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 7 cut(s) 120, 124, 257, 294, 294, 321, 477
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 2 cut(s) 152, 224
MaeII ACGT 1 cut(s) 416
MalI GATC 2 cut(s) 474, 484
MboI GATC 2 cut(s) 472, 482
MboII GAAGA 2 cut(s) 187, 306
MhlI GDGCHC 2 cut(s) 207, 366
MluCI AATT 2 cut(s) 375, 468
MmeI TCCRAC 2 cut(s) 105, 422
MnlI CCTC 3 cut(s) 269, 279, 417
MseI TTAA 2 cut(s) 378, 452
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 282, 309
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 309
NciI CCSGG 1 cut(s) 282
NdeII GATC 2 cut(s) 472, 482
NlaIII CATG 3 cut(s) 89, 248, 362
NlaIV GGNNCC 1 cut(s) 267
NspI RCATGY 2 cut(s) 89, 362
PceI AGGCCT 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 4 cut(s) 110, 344, 385, 406
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 265
RsaI GTAC 2 cut(s) 93, 437
RsaNI GTAC 2 cut(s) 92, 436
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 378, 452
Sau3AI GATC 2 cut(s) 472, 482
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 282, 309
SduI GDGCHC 2 cut(s) 207, 366
SetI ASST 4 cut(s) 109, 310, 419, 466
SexAI ACCWGGT 1 cut(s) 307
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 2 cut(s) 375, 468
SseBI AGGCCT 1 cut(s) 427
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 152, 224
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 280, 307
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 481
TasI AATT 2 cut(s) 375, 468
TatI WGTACW 2 cut(s) 91, 435
TfiI GAWTC 4 cut(s) 110, 344, 385, 406
Tru1I TTAA 2 cut(s) 378, 452
Tru9I TTAA 2 cut(s) 378, 452
TscAI CASTG 3 cut(s) 27, 336, 426
TspDTI ATGAA 4 cut(s) 69, 149, 261, 474
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 3 cut(s) 27, 336, 426
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 2 cut(s) 89, 362
XspI CTAG 2 cut(s) 152, 224
ZraI GACGTC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.