Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23875237 .. 23877794

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTTCTATTCTTGCGTGAAGTACAATCTTGAAGAAACTCGAAAGAAAATTGCTAAGGATCCAGATACAGTGACATTTGAAGAGGAAGATTTAATCGTTAAAGTCGGGGAGTGCTTGCAGGAACGTGTCAAGGAAAGACCTACGAACTCTAAGAGTAACTCTCCATTCTCTTCCACTGCCCCTCCTTGGGAGGATTTCAGAAGTACAAGTGCTGCTGGAACTGCAAGTGCAGTTTCCTTCAGTGACGATGAAGATGCAACGCAGATGACTGGCTCAACATCCACTGCCAGAGGCCGCAAGGGCAGAACGTCTACCTCAGAAGTTGGTAAAGGTAAAACTACTGCAAGAGGAAGGGGCAGAGGCAGGGGCAGGGGTACCAGTACCTTGAAGCAGACGACTCTCGATGCATCTCTTGGATTTCGGTCTTCTCAGAGATCTGCATCAGTTGCTGCAACTGCCGCTGTACGAAGTATTGCTGATGATGGGGATGATGTGGATTCTCCTTCGAGTGAAGAAGAGGCGGGGAAACTCGGAATTGATGAGGTTGATAATAGTTCGGAAAATGATGAAATTGTTCCAAGTAGAGGACGGAAAAGGGCTGCACCAAGGGGGAGAGGTAGAGGCTCTACGCAACCATCTAAGCGTGGAAAGAAATCAGATAGCTCTGCAATTAACCGAATGTTTATGAACAAAGATGATGACGACGATGATGAAGATGTGACAAAGAGATTAAATAAGCCTCTGCCTCGGGTCACGAGAAATTACGGCGCTCTTAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000791 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0099086

KEGG Pathways

Metabolic & Signaling

ko03440 ko03450 ko04218 map03440 map03450 map04218

Pfam Domains

Protein Families

Metallophos Mre11_DNA_bind

Protein Analysis

262

Amino Acids

28.3

Weight (kDa)

9.16

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	3 cut(s)	298, 462, 524
AclWI	GGATC	2 cut(s)	56, 69
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	5 cut(s)	26, 208, 379, 385, 468
AfiI	CCNNNNNNNGG	3 cut(s)	189, 190, 587
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	35, 83, 391
AluBI	AGCT	1 cut(s)	666
AluI	AGCT	1 cut(s)	666
AlwI	GGATC	2 cut(s)	56, 69
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	215, 452, 602
Asp700I	GAANNNNTTC	1 cut(s)	576
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	750
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	757
BbsI	GAAGAC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	202, 439, 589
BccI	CCATC	2 cut(s)	479, 646
BceAI	ACGGC	1 cut(s)	784
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BfoI	RGCGCY	1 cut(s)	774
BglI	GCCNNNNNGGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	5 cut(s)	216, 298, 453, 462, 603
BlsI	GCNGC	5 cut(s)	217, 299, 454, 463, 604
BmeT110I	CYCGRG	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	63, 379
BmsI	GCATC	4 cut(s)	247, 397, 419, 452
BpiI	GAAGAC	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
Bpu10I	CCTNAGC	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	442
BsaJI	CCNNGG	3 cut(s)	188, 608, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 190, 587
Bse1I	ACTGG	2 cut(s)	277, 381
Bse8I	GATNNNNATC	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	188, 608, 749
BseGI	GGATG	2 cut(s)	281, 496
BseJI	GATNNNNATC	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	189, 190, 587
BseMII	CTCAG	2 cut(s)	333, 446
BseNI	ACTGG	2 cut(s)	277, 381
BseXI	GCAGC	3 cut(s)	202, 439, 589
BsgI	GTGCAG	2 cut(s)	252, 588
BshFI	GGCC	1 cut(s)	297
BshNI	GGYRCC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	750
BslI	CCNNNNNNNGG	3 cut(s)	189, 190, 587
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	750
Bsp143I	GATC	2 cut(s)	61, 437
BspACI	CCGC	3 cut(s)	298, 462, 524
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	332, 445
BspLI	GGNNCC	2 cut(s)	63, 379
BspPI	GGATC	2 cut(s)	56, 69
BspT107I	GGYRCC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	277, 381
BssECI	CCNNGG	3 cut(s)	188, 608, 749
BssMI	GATC	2 cut(s)	61, 437
BssSI	CACGAG	1 cut(s)	757
BssT1I	CCWWGG	2 cut(s)	188, 608
Bst2BI	CACGAG	1 cut(s)	757
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	3 cut(s)	78, 178, 513
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	6 cut(s)	57, 153, 319, 432, 642, 776
BstF5I	GGATG	2 cut(s)	281, 496
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	2 cut(s)	64, 440
BstMBI	GATC	2 cut(s)	61, 437
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 303, 449, 458, 461
BstV1I	GCAGC	3 cut(s)	202, 439, 589
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	61, 437
BstYI	RGATCY	2 cut(s)	61, 437
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	281, 496
BtsI	GCAGTG	2 cut(s)	177, 285
BtsIMutI	CAGTG	4 cut(s)	78, 177, 250, 285
Cac8I	GCNNGC	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	773
Csp6I	GTAC	5 cut(s)	25, 207, 378, 384, 467
CviJI	RGCY	7 cut(s)	5, 276, 297, 602, 627, 666, 742
CviKI_1	RGCY	7 cut(s)	5, 276, 297, 602, 627, 666, 742
CviQI	GTAC	5 cut(s)	25, 207, 378, 384, 467
DdeI	CTNAG	6 cut(s)	57, 153, 319, 432, 642, 776
DpnI	GATC	2 cut(s)	63, 439
DpnII	GATC	2 cut(s)	61, 437
Eam1104I	CTCTTC	3 cut(s)	78, 178, 513
EarI	CTCTTC	3 cut(s)	78, 178, 513
Eco130I	CCWWGG	2 cut(s)	188, 608
Eco57I	CTGAAG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	750
EcoT14I	CCWWGG	2 cut(s)	188, 608
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	2 cut(s)	188, 608
FaiI	YATR	1 cut(s)	689
FauI	CCCGC	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	5 cut(s)	216, 298, 453, 462, 603
FokI	GGATG	2 cut(s)	268, 503
Fsp4HI	GCNGC	5 cut(s)	216, 298, 453, 462, 603
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	5 cut(s)	216, 298, 453, 462, 603
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	773
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HinfI	GANTC	2 cut(s)	400, 500
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	6 cut(s)	203, 322, 435, 536, 562, 661
Hpy188III	TCNNGA	4 cut(s)	32, 65, 404, 757
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	4 cut(s)	250, 348, 516, 774
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	127, 311
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 303, 449, 458, 461
HpyF3I	CTNAG	6 cut(s)	57, 153, 319, 432, 642, 776
HpySE526I	ACGT	2 cut(s)	127, 311
HspAI	GCGC	1 cut(s)	771
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	61, 437
LpnPI	CCDG	8 cut(s)	78, 107, 204, 258, 304, 352, 358, 394
Lsp1109I	GCAGC	3 cut(s)	202, 439, 589
LweI	GCATC	4 cut(s)	247, 397, 419, 452
MaeII	ACGT	2 cut(s)	127, 311
MaeIII	GTNAC	5 cut(s)	73, 158, 245, 721, 754
MalI	GATC	2 cut(s)	63, 439
MboI	GATC	2 cut(s)	61, 437
MboII	GAAGA	9 cut(s)	47, 95, 101, 165, 266, 420, 527, 530, 728
MflI	RGATCY	2 cut(s)	61, 437
MluCI	AATT	5 cut(s)	51, 537, 573, 672, 763
MlyI	GAGTC	1 cut(s)	394
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	4 cut(s)	95, 102, 675, 734
MspA1I	CMGCKG	1 cut(s)	464
MwoI	GCNNNNNNNGC	5 cut(s)	224, 303, 449, 458, 461
NdeII	GATC	2 cut(s)	61, 437
NlaIV	GGNNCC	2 cut(s)	63, 379
NmuCI	GTSAC	4 cut(s)	73, 245, 721, 754
NsiI	ATGCAT	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	217, 299, 454, 463, 604
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	63, 379
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	61, 437
RsaI	GTAC	5 cut(s)	26, 208, 379, 385, 468
RsaNI	GTAC	5 cut(s)	25, 207, 378, 384, 467
SaqAI	TTAA	4 cut(s)	95, 102, 675, 734
SatI	GCNGC	5 cut(s)	216, 298, 453, 462, 603
Sau3AI	GATC	2 cut(s)	61, 437
SchI	GAGTC	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	247, 397, 419, 452
Sse9I	AATT	5 cut(s)	51, 537, 573, 672, 763
SsiI	CCGC	3 cut(s)	298, 462, 524
StyI	CCWWGG	2 cut(s)	188, 608
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	130, 314
TaqI	TCGA	3 cut(s)	43, 405, 509
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	5 cut(s)	51, 537, 573, 672, 763
TatI	WGTACW	2 cut(s)	24, 206
TauI	GCSGC	2 cut(s)	300, 464
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	4 cut(s)	95, 102, 675, 734
Tru9I	TTAA	4 cut(s)	95, 102, 675, 734
TscAI	CASTG	4 cut(s)	78, 184, 250, 292
TseFI	GTSAC	4 cut(s)	73, 245, 721, 754
TseI	GCWGC	3 cut(s)	215, 452, 602
Tsp45I	GTSAC	4 cut(s)	73, 245, 721, 754
TspDTI	ATGAA	4 cut(s)	267, 585, 704, 729
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	4 cut(s)	78, 184, 250, 292
XmiI	GTMKAC	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.