Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24100358 .. 24100936

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTAATATGCCAGAGGAGGTAACTGAAGGGTCTGTCATCATTGTTGATGCGGGACTTGCTGGACTAGCAGCTGCAAGGCAGCTCATGCAATTGGGTTTCAAGGTGGCTGTTTTAGAAGGTAGGAATCGACCAGGTGGAAGAGTTTACACCCAAAAGATGGGGAAGGATGTAAAGTTTTCTGCTGTGGATCTTGGCAGCAGTGTCATCACTGGCATCCATGCTAACCCTCTTGGAGTTCTGGTGAGGCAACTCTCCATTCTGCTTCATAAGGTCAGAGATAATTGTCCTTTGTACAAACCTGATGGGAAACCTGTTGATAAGGACATTGATTCTAAGATTGAAGTCATCTTTAATAAGTTGCTTGACAAAGTCATGGAACTCCGACAAACAATGGGTGGGTTTGGAAATGATATTTCTCTGGCTTCGGTTTTGGAGACGCTGAGGCAGTTGTATTCTGTCGCTAGAAGTACTGAGGAGAGGCAACTTCTTGATTGGCATCATGCAAATTTGGATTATGCAAATGCTGGATGTCTATCAGATCTCTCAGCCGTGTATTGGGATCAGGATGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034968 GO:0036211 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051568 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Amino_oxidase SWIRM

Protein Analysis

193

Amino Acids

21.08

Weight (kDa)

5.56

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_8	PF13450	18 - 76	4.7e-11	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	20 - 183	7e-18	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	3 cut(s)	198, 566, 570
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	296, 472
AfiI	CCNNNNNNNGG	2 cut(s)	160, 558
AgsI	TTSAA	2 cut(s)	103, 344
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	2 cut(s)	74, 85
AluI	AGCT	2 cut(s)	74, 85
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	3 cut(s)	198, 566, 570
ApeKI	GCWGC	4 cut(s)	71, 74, 82, 198
ApoI	RAATTY	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	443
BbvI	GCAGC	4 cut(s)	61, 83, 94, 210
BccI	CCATC	2 cut(s)	154, 299
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	68, 465
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	4 cut(s)	72, 75, 83, 199
BlsI	GCNGC	4 cut(s)	73, 76, 84, 200
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	40, 225, 508
Bpu10I	CCTNAGC	1 cut(s)	443
BsaBI	GATNNNNATC	2 cut(s)	498, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 558
Bse1I	ACTGG	1 cut(s)	217
Bse8I	GATNNNNATC	2 cut(s)	498, 535
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	4 cut(s)	175, 216, 536, 574
BseJI	GATNNNNATC	2 cut(s)	498, 535
BseLI	CCNNNNNNNGG	2 cut(s)	160, 558
BseMII	CTCAG	3 cut(s)	434, 465, 561
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	32, 491
BseXI	GCAGC	4 cut(s)	61, 83, 94, 210
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	160, 558
BsmAI	GTCTC	1 cut(s)	431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	190, 541, 562, 571
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	435, 466, 560
BspPI	GGATC	3 cut(s)	198, 566, 570
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	4 cut(s)	190, 541, 562, 571
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstAUI	TGTACA	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	336, 443, 474, 547, 576
BstF5I	GGATG	4 cut(s)	175, 216, 536, 574
BstKTI	GATC	4 cut(s)	193, 544, 565, 574
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	4 cut(s)	190, 541, 562, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 68, 88
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	4 cut(s)	61, 83, 94, 210
BstX2I	RGATCY	2 cut(s)	190, 541
BstYI	RGATCY	2 cut(s)	190, 541
BtsCI	GGATG	4 cut(s)	175, 216, 536, 574
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 210
CseI	GACGC	1 cut(s)	448
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	295, 471
CviAII	CATG	4 cut(s)	88, 221, 376, 503
CviJI	RGCY	6 cut(s)	5, 74, 85, 110, 425, 551
CviKI_1	RGCY	6 cut(s)	5, 74, 85, 110, 425, 551
CviQI	GTAC	2 cut(s)	295, 471
DdeI	CTNAG	5 cut(s)	336, 443, 474, 547, 576
DpnI	GATC	4 cut(s)	192, 543, 564, 573
DpnII	GATC	4 cut(s)	190, 541, 562, 571
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	4 cut(s)	91, 224, 379, 506
FaiI	YATR	7 cut(s)	11, 89, 222, 270, 377, 504, 519
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	4 cut(s)	87, 220, 375, 502
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	72, 75, 83, 199
FokI	GGATG	3 cut(s)	182, 203, 543
Fsp4HI	GCNGC	4 cut(s)	72, 75, 83, 199
FspBI	CTAG	2 cut(s)	68, 465
GluI	GCNGC	4 cut(s)	72, 75, 83, 199
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	91, 224, 379, 506
HinfI	GANTC	2 cut(s)	127, 332
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	278, 386, 541
Hpy188III	TCNNGA	2 cut(s)	491, 566
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	23, 113, 160
HpyCH4V	TGCA	4 cut(s)	77, 91, 506, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 68, 88
HpyF3I	CTNAG	5 cut(s)	336, 443, 474, 547, 576
Hsp92II	CATG	4 cut(s)	91, 224, 379, 506
Kzo9I	GATC	4 cut(s)	190, 541, 562, 571
Lsp1109I	GCAGC	4 cut(s)	61, 83, 94, 210
LweI	GCATC	3 cut(s)	40, 225, 508
MabI	ACCWGGT	1 cut(s)	133
MaeI	CTAG	2 cut(s)	68, 465
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	192, 543, 564, 573
MboI	GATC	4 cut(s)	190, 541, 562, 571
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	2 cut(s)	190, 541
MluCI	AATT	3 cut(s)	92, 283, 508
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	7 cut(s)	10, 13, 240, 240, 438, 469, 474
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	59, 68, 88
NdeII	GATC	4 cut(s)	190, 541, 562, 571
NlaIII	CATG	4 cut(s)	91, 224, 379, 506
PfeI	GAWTC	2 cut(s)	127, 332
PflFI	GACNNNGTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	73, 76, 84, 200
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	190, 541
PsyI	GACNNNGTC	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	296, 472
RsaNI	GTAC	2 cut(s)	295, 471
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	4 cut(s)	72, 75, 83, 199
Sau3AI	GATC	4 cut(s)	190, 541, 562, 571
ScaI	AGTACT	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	9 cut(s)	24, 76, 87, 108, 124, 139, 276, 304, 316
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	40, 225, 508
Sse9I	AATT	3 cut(s)	92, 283, 508
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	68, 465
StyD4I	CCNGG	1 cut(s)	133
TaqI	TCGA	1 cut(s)	130
TasI	AATT	3 cut(s)	92, 283, 508
TatI	WGTACW	2 cut(s)	294, 470
TfiI	GAWTC	2 cut(s)	127, 332
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	208, 217
TseI	GCWGC	4 cut(s)	71, 74, 82, 198
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	208, 217
Tth111I	GACNNNGTC	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	160
XapI	RAATTY	1 cut(s)	508
XspI	CTAG	2 cut(s)	68, 465
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.