pycom11g21490

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
24647270 .. 24648908
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
ATGCTGCTTAATGTAAAAGGCTCTAATCTTTATTTCTGGATTGCAATCATTCCAATTGCGCTAGTTCTTCTTGTGGGAATGAAGCTGCAGCATATTATTGCAACCCTAGCATTGGAGAATGCTGGTATAACTGGATCTCGTCGAGAAGCAAAGCTGAGGCCTCGGGATGATCTTTTCTGGTTCAAGAAGCCCGAACTTTTGTTGTCCTTGATCCATTTTTGTTTATTCCAGAATGCATTTGAATTGGCTACATTCTTTTGGTTTTGGTGGCAGTTTGGGTATAATTCTTGCTTTATCCGAAAGCATTGGCTCGTGTATATGAGGCTGATTTTAGGGTTCGCCGGGCAGTTCTTGTGCAGCTACATCACCTTGCCACTGTATGCCTTGGTTACTCAGATGGGAACAAATTATAAGGCGGCAATAATTCCACAAAGGATAAGAGAAACAATTCATGGATGGGGAGAGGCAGCTAGAAGAAGAAGAAGGCTAGGCATATCCAACGATGGTTCAACCATACGCACAGAAACAAGCACATTAGTATCGCTTGAGGAAGATGATGATCAAACGCTCGATTGCCCTGCAGATGATGCTAATACGCATAATGGAATTGAAATGCAACCGGTTTCTAGTTCTCCGCCCAGTCCTTGCCCAGTTGATGACGAAACCCCAAGTACGCCAGCTACACCCCTTCTTCAAGCATCGGCTTCTATTTCTTCTTCATCGGTTTCATTGACTATTCAAACAGAAGGTATTCAAAGATCCGCATCAATGCCAGCTAGAAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

263

Amino Acids

29.48

Weight (kDa)

6.96

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 1 - 170 1.5e-61 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AciI CCGC 3 cut(s) 416, 635, 762
AclWI GGATC 3 cut(s) 142, 205, 753
AfaI GTAC 1 cut(s) 673
AfiI CCNNNNNNNGG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 619
AgsI TTSAA 7 cut(s) 184, 242, 510, 611, 695, 740, 755
AluBI AGCT 6 cut(s) 85, 154, 360, 470, 680, 776
AluI AGCT 6 cut(s) 85, 154, 360, 470, 680, 776
AlwI GGATC 3 cut(s) 142, 205, 753
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 5 cut(s) 4, 85, 88, 357, 467
AsiGI ACCGGT 1 cut(s) 619
Asp700I GAANNNNTTC 2 cut(s) 447, 750
AspLEI GCGC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 162
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BauI CACGAG 1 cut(s) 311
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 4 cut(s) 72, 100, 369, 479
BccI CCATC 3 cut(s) 391, 450, 497
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 343
BfaI CTAG 6 cut(s) 62, 107, 471, 488, 627, 777
BfmI CTRYAG 2 cut(s) 86, 579
BisI GCNGC 6 cut(s) 5, 86, 89, 358, 417, 468
BlsI GCNGC 6 cut(s) 6, 87, 90, 359, 418, 469
Bme1390I CCNGG 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 2 cut(s) 633, 644
BmsI GCATC 3 cut(s) 577, 707, 773
BmuI ACTGGG 2 cut(s) 633, 644
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 343
BsaBI GATNNNNATC 3 cut(s) 44, 558, 763
BsaJI CCNNGG 2 cut(s) 161, 384
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 3 cut(s) 136, 639, 650
Bse8I GATNNNNATC 3 cut(s) 44, 558, 763
BseDI CCNNGG 2 cut(s) 161, 384
BseGI GGATG 2 cut(s) 172, 461
BseJI GATNNNNATC 3 cut(s) 44, 558, 763
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 146, 407
BseNI ACTGG 3 cut(s) 136, 639, 650
BseXI GCAGC 4 cut(s) 72, 100, 369, 479
BsgI GTGCAG 1 cut(s) 376
BshFI GGCC 1 cut(s) 160
BshTI ACCGGT 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 342, 620
BslI CCNNNNNNNGG 1 cut(s) 112
BsmI GAATGC 2 cut(s) 124, 238
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 5 cut(s) 134, 169, 210, 559, 758
BspACI CCGC 3 cut(s) 416, 635, 762
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 2 cut(s) 147, 406
BspMAI CTGCAG 2 cut(s) 90, 583
BspPI GGATC 3 cut(s) 142, 205, 753
BsrFI RCCGGY 1 cut(s) 619
BsrI ACTGG 3 cut(s) 136, 639, 650
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 2 cut(s) 161, 384
BssMI GATC 5 cut(s) 134, 169, 210, 559, 758
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 678, 774
BstDEI CTNAG 2 cut(s) 155, 393
BstF5I GGATG 2 cut(s) 172, 461
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 5 cut(s) 137, 172, 213, 562, 761
BstMBI GATC 5 cut(s) 134, 169, 210, 559, 758
BstMWI GCNNNNNNNGC 2 cut(s) 107, 587
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 2 cut(s) 86, 579
BstV1I GCAGC 4 cut(s) 72, 100, 369, 479
BstX2I RGATCY 2 cut(s) 134, 758
BstYI RGATCY 2 cut(s) 134, 758
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 172, 461
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 2 cut(s) 678, 774
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 619
Csp6I GTAC 1 cut(s) 672
CspAI ACCGGT 1 cut(s) 619
CviAII CATG 1 cut(s) 452
CviQI GTAC 1 cut(s) 672
DdeI CTNAG 2 cut(s) 155, 393
DpnI GATC 5 cut(s) 136, 171, 212, 561, 760
DpnII GATC 5 cut(s) 134, 169, 210, 559, 758
EciI GGCGGA 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 455
FatI CATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 6 cut(s) 5, 86, 89, 358, 417, 468
FokI GGATG 2 cut(s) 179, 468
Fsp4HI GCNGC 6 cut(s) 5, 86, 89, 358, 417, 468
FspBI CTAG 6 cut(s) 62, 107, 471, 488, 627, 777
GlaI GCGC 1 cut(s) 60
GluI GCNGC 6 cut(s) 5, 86, 89, 358, 417, 468
HaeIII GGCC 1 cut(s) 160
HapII CCGG 2 cut(s) 342, 620
HhaI GCGC 1 cut(s) 61
Hin1II CATG 1 cut(s) 455
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HpaII CCGG 2 cut(s) 342, 620
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 299, 396
Hpy188III TCNNGA 5 cut(s) 37, 143, 164, 184, 229
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 4 cut(s) 477, 698, 740, 774
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4V TGCA 7 cut(s) 44, 88, 101, 236, 357, 581, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 587
HpyF3I CTNAG 2 cut(s) 155, 393
Hsp92II CATG 1 cut(s) 455
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 5 cut(s) 134, 169, 210, 559, 758
Lsp1109I GCAGC 4 cut(s) 72, 100, 369, 479
LweI GCATC 3 cut(s) 577, 707, 773
MaeI CTAG 6 cut(s) 62, 107, 471, 488, 627, 777
MaeIII GTNAC 1 cut(s) 388
MalI GATC 5 cut(s) 136, 171, 212, 561, 760
MboI GATC 5 cut(s) 134, 169, 210, 559, 758
MboII GAAGA 8 cut(s) 59, 486, 489, 492, 563, 683, 705, 708
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 2 cut(s) 134, 758
MluCI AATT 7 cut(s) 54, 242, 283, 406, 423, 447, 606
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 5 cut(s) 150, 171, 315, 457, 541
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 2 cut(s) 447, 750
MseI TTAA 1 cut(s) 9
MspI CCGG 2 cut(s) 342, 620
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 2 cut(s) 124, 238
MwoI GCNNNNNNNGC 2 cut(s) 107, 587
NciI CCSGG 1 cut(s) 343
NdeII GATC 5 cut(s) 134, 169, 210, 559, 758
NlaIII CATG 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 238
PceI AGGCCT 1 cut(s) 160
PctI GAATGC 2 cut(s) 124, 238
PdmI GAANNNNTTC 2 cut(s) 447, 750
PinAI ACCGGT 1 cut(s) 619
PkrI GCNGC 6 cut(s) 6, 87, 90, 359, 418, 469
PsiI TTATAA 1 cut(s) 411
PstI CTGCAG 2 cut(s) 90, 583
PsuI RGATCY 2 cut(s) 134, 758
RsaI GTAC 1 cut(s) 673
RsaNI GTAC 1 cut(s) 672
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 6 cut(s) 5, 86, 89, 358, 417, 468
Sau3AI GATC 5 cut(s) 134, 169, 210, 559, 758
ScrFI CCNGG 1 cut(s) 343
SetI ASST 8 cut(s) 87, 156, 362, 371, 472, 682, 751, 778
SfaNI GCATC 3 cut(s) 577, 707, 773
SfcI CTRYAG 2 cut(s) 86, 579
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 7 cut(s) 54, 242, 283, 406, 423, 447, 606
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 3 cut(s) 416, 635, 762
SspMI CTAG 6 cut(s) 62, 107, 471, 488, 627, 777
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 378
TaqI TCGA 2 cut(s) 142, 570
TasI AATT 7 cut(s) 54, 242, 283, 406, 423, 447, 606
TauI GCSGC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 381
TseI GCWGC 5 cut(s) 4, 85, 88, 357, 467
TspDTI ATGAA 4 cut(s) 95, 440, 708, 717
TspRI CASTG 1 cut(s) 381
XmnI GAANNNNTTC 2 cut(s) 447, 750
XspI CTAG 6 cut(s) 62, 107, 471, 488, 627, 777
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.