Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25009298 .. 25010130

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTACAGACTTGTTTTGCAGACATTATTGGGCTCTTCTTGGGGAAATAACAAAAATATACATGCTCAGTTCAAGTCACTTTTTCCCAAGCCGTTTATAAACCTAATTCTATTGATACACATGTTTAATTTTTATGATTTGCATATTGAGTTGTTGGTTCAGTATTGGAAAGAATTCGGCTTGCACAAGGTTTGTAAGTACACCAGGTTGTGGTTGAGAGCGATTCCACTCAGGCTTACGATCAACGAACACTCACAGGATTTGTATGCATTTTGCTTGCTAGCGGAGGACGCACTGCATGTGGCGGCAACTCTACACCCCACACAGACCTTGCACATCCCTAGAACCTGTAATGGATTAGCTCAGTTTGCTGTTTCAAATAGTAACCTTTCTTTGAGGTCAATAATATATTTAATCCTCTGTCTACTATTTAGACAGATATCGTCACCCATTGTTACTAAGAAACTGAAAGAAACCTCAAAAACGGAAGAAAAAGGGAAAAGTGCAGAAGAAACATATGGATCGATCGAAGAAGATCCTTTCTCTTCCCTTTTTTTTCGCAAGAAAAATAGGATATGGACAAAATTGATGAAACAAAAAAGATCTGAAGGAATGAAGATGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

210

Amino Acids

24.45

Weight (kDa)

9.74

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	125 - 178	1.2e-06	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	2 cut(s)	284, 305
AclWI	GGATC	2 cut(s)	529, 530
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	2 cut(s)	5, 200
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	73, 378
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
AlwI	GGATC	2 cut(s)	529, 530
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	438
AsuNHI	GCTAGC	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	107, 140
BanII	GRGCYC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	205
BfaI	CTAG	2 cut(s)	281, 342
BglII	AGATCT	1 cut(s)	602
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	205
BseCI	ATCGAT	1 cut(s)	524
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	80, 244, 377
BsgI	GTGCAG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	240, 521, 525, 535, 602
BspACI	CCGC	2 cut(s)	284, 305
BspCNI	CTCAG	3 cut(s)	79, 243, 376
BspDI	ATCGAT	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	529, 530
BspQI	GCTCTTC	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	5 cut(s)	240, 521, 525, 535, 602
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	40, 550
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	182, 278, 282
BstDEI	CTNAG	4 cut(s)	66, 230, 363, 459
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	5 cut(s)	243, 524, 528, 538, 605
BstMBI	GATC	5 cut(s)	240, 521, 525, 535, 602
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 368
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	3 cut(s)	65, 124, 302
BstSCI	CCNGG	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	535, 602
BstYI	RGATCY	2 cut(s)	535, 602
Bsu15I	ATCGAT	1 cut(s)	524
BsuTUI	ATCGAT	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	3 cut(s)	182, 278, 282
ClaI	ATCGAT	1 cut(s)	524
CseI	GACGC	1 cut(s)	299
CsiI	ACCWGGT	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	4, 199
CviAII	CATG	3 cut(s)	62, 121, 299
CviJI	RGCY	5 cut(s)	33, 91, 180, 235, 362
CviKI_1	RGCY	5 cut(s)	33, 91, 180, 235, 362
CviQI	GTAC	2 cut(s)	4, 199
DdeI	CTNAG	4 cut(s)	66, 230, 363, 459
DpnI	GATC	5 cut(s)	242, 523, 527, 537, 604
DpnII	GATC	5 cut(s)	240, 521, 525, 535, 602
Eam1104I	CTCTTC	2 cut(s)	40, 550
EarI	CTCTTC	2 cut(s)	40, 550
Eco24I	GRGCYC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	3 cut(s)	65, 124, 302
FatI	CATG	3 cut(s)	61, 120, 298
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	281, 342
GluI	GCNGC	1 cut(s)	306
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	65, 124, 302
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	2 cut(s)	201, 425
Hpy188I	TCNGA	1 cut(s)	607
Hpy8I	GTNNAC	2 cut(s)	201, 425
HpyAV	CCTTC	1 cut(s)	602
HpyCH4V	TGCA	7 cut(s)	19, 142, 184, 269, 298, 334, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 368
HpyF3I	CTNAG	4 cut(s)	66, 230, 363, 459
Hsp92II	CATG	3 cut(s)	65, 124, 302
Kzo9I	GATC	5 cut(s)	240, 521, 525, 535, 602
LguI	GCTCTTC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	190, 217, 217, 242, 361
MabI	ACCWGGT	1 cut(s)	203
MaeI	CTAG	2 cut(s)	281, 342
MaeIII	GTNAC	4 cut(s)	75, 383, 444, 454
MalI	GATC	5 cut(s)	242, 523, 527, 537, 604
MboI	GATC	5 cut(s)	240, 521, 525, 535, 602
MboII	GAAGA	7 cut(s)	27, 500, 521, 537, 542, 545, 628
MflI	RGATCY	2 cut(s)	535, 602
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	4 cut(s)	105, 127, 173, 584
MnlI	CCTC	4 cut(s)	280, 390, 428, 487
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	126, 413
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	290, 368
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	240, 521, 525, 535, 602
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	65, 124, 302
NmuCI	GTSAC	2 cut(s)	75, 444
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	3 cut(s)	65, 124, 302
PciI	ACATGT	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	307
Ple19I	CGATCG	1 cut(s)	528
PscI	ACATGT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	535, 602
PvuI	CGATCG	1 cut(s)	528
RsaI	GTAC	2 cut(s)	5, 200
RsaNI	GTAC	2 cut(s)	4, 199
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	126, 413
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	5 cut(s)	240, 521, 525, 535, 602
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	9 cut(s)	105, 192, 209, 332, 350, 364, 390, 401, 479
SexAI	ACCWGGT	1 cut(s)	203
Sse9I	AATT	4 cut(s)	105, 127, 173, 584
SsiI	CCGC	2 cut(s)	284, 305
SspMI	CTAG	2 cut(s)	281, 342
StyD4I	CCNGG	1 cut(s)	203
TaqI	TCGA	2 cut(s)	524, 528
TasI	AATT	4 cut(s)	105, 127, 173, 584
TatI	WGTACW	2 cut(s)	3, 198
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	126, 413
Tru9I	TTAA	2 cut(s)	126, 413
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	75, 444
Tsp45I	GTSAC	2 cut(s)	75, 444
TspDTI	ATGAA	2 cut(s)	605, 629
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	3 cut(s)	65, 124, 302
XmiI	GTMKAC	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	281, 342
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.