Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25114702 .. 25115857

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATAAAAGCTGATCGGAAGATCACTGCCTTGAAACAGTTGCAAGGTCATATCTGGAGAACTGGATTTGAAAAGAATGAATTGACAGGAGTAGTTTTCGATGATGTACCAGAAGCTCTTAAGAAATGGCATGATTCAGGCATAAAGGTCTACATATACTCTAGTGGTAGCAGGTTGGCACAGAGACTTATATTTGGTAACTCAAATTATGGGGACCTAAGAGAATATTTGTCTGGATTTTTTGACACCACAGTAGGAAACAAAAGAGAAAGTAGCAGTTATGCTGAAATTGTACAATCAGTTGGAGTTGATAGACCATCAGAGGTTTTATTTGTGACAGATGTCTTTCAAGAAGCTGCAGCTGCAAAGGCAGCAGGATTGGAAGTTATTGTATCGATCCGACCAGGGAATGGAGCTCTTCCAGAGAATCATGGTTTCAAGACAATCACTTCTTTCTTGGAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

Aldolase_II Hydrolase

Protein Analysis

156

Amino Acids

17.13

Weight (kDa)

6.3

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	18 - 126	1.9e-10	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	391
AfaI	GTAC	2 cut(s)	108, 294
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	119
AgsI	TTSAA	4 cut(s)	34, 71, 350, 439
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	5 cut(s)	11, 116, 356, 362, 416
AluI	AGCT	5 cut(s)	11, 116, 356, 362, 416
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	391
ApeKI	GCWGC	4 cut(s)	356, 359, 362, 371
AspS9I	GGNCC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	4 cut(s)	343, 349, 371, 383
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	4 cut(s)	357, 360, 363, 372
BlsI	GCNGC	4 cut(s)	358, 361, 364, 373
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	405
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	343, 349, 371, 383
BshVI	ATCGAT	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	13, 21, 396
BspDI	ATCGAT	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	3 cut(s)	13, 21, 396
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	39, 253
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	218
BstKTI	GATC	3 cut(s)	16, 24, 399
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	13, 21, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 368, 371
BstNI	CCWGG	1 cut(s)	405
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	343, 349, 371, 383
Bsu15I	ATCGAT	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	107, 293
CviAII	CATG	2 cut(s)	131, 431
CviJI	RGCY	5 cut(s)	11, 116, 356, 362, 416
CviKI_1	RGCY	5 cut(s)	11, 116, 356, 362, 416
CviQI	GTAC	2 cut(s)	107, 293
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	3 cut(s)	15, 23, 398
DpnII	GATC	3 cut(s)	13, 21, 396
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	2 cut(s)	134, 434
FaiI	YATR	9 cut(s)	51, 132, 143, 155, 157, 191, 210, 282, 432
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	130, 430
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	357, 360, 363, 372
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	4 cut(s)	357, 360, 363, 372
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	4 cut(s)	357, 360, 363, 372
GsuI	CTGGAG	1 cut(s)	76
Hin1II	CATG	2 cut(s)	134, 434
HinfI	GANTC	2 cut(s)	134, 427
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	18, 322, 401, 467
Hpy188III	TCNNGA	5 cut(s)	55, 234, 350, 422, 439
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	39, 253
HpyCH4V	TGCA	3 cut(s)	43, 359, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 368, 371
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	134, 434
Kzo9I	GATC	3 cut(s)	13, 21, 396
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	4 cut(s)	343, 349, 371, 383
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	197, 334
MalI	GATC	3 cut(s)	15, 23, 398
MboI	GATC	3 cut(s)	13, 21, 396
MboII	GAAGA	2 cut(s)	31, 410
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	3 cut(s)	80, 205, 288
MmeI	TCCRAC	2 cut(s)	283, 424
MnlI	CCTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	362, 368, 371
NdeII	GATC	3 cut(s)	13, 21, 396
NlaIII	CATG	2 cut(s)	134, 434
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	134, 427
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	358, 361, 364, 373
PpuMI	RGGWCCY	1 cut(s)	214
PshAI	GACNNNNGTC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	108, 294
RsaNI	GTAC	2 cut(s)	107, 293
SacI	GAGCTC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	357, 360, 363, 372
Sau3AI	GATC	3 cut(s)	13, 21, 396
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	80, 205, 288
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	39, 253
TaqI	TCGA	2 cut(s)	99, 395
TasI	AATT	3 cut(s)	80, 205, 288
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	134, 427
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	4 cut(s)	356, 359, 362, 371
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	410
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.