pycom11g22130

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
25130760 .. 25131958
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGACTGTCCTTCTAAATGCTCAAAGAGAATTGGCTGACAAAATTTTGGATGCGCAGTGGGAGACTAGATGGCGACAAGAAAGGTTGAATGAGATGTTGGAGGAGAAGGTACGGCCGTACATGCAGAGTATTGACAGTGGGACCCTCTCCCAGCCTATTATATTACAATTACAAGATCAGAATCAGAAGAGGACCCGACAACGGAGATGGTGGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

9.06

Weight (kDa)

9.51

Isoelectric Point (pI)

81.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 1 cut(s) 42
AfaI GTAC 2 cut(s) 111, 119
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 42
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 141, 192
AvaII GGWCC 2 cut(s) 141, 192
BaeI ACNNNNGTAYC 2 cut(s) 101, 134
BccI CCATC 2 cut(s) 63, 201
BceAI ACGGC 2 cut(s) 100, 128
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 66
Bme18I GGWCC 2 cut(s) 141, 192
BmgT120I GGNCC 2 cut(s) 141, 192
BmiI GGNNCC 3 cut(s) 142, 143, 194
BmsI GCATC 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 180
BseGI GGATG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 116
BseX3I CGGCCG 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 115
BspLI GGNNCC 3 cut(s) 142, 143, 194
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 7, 137
Bst6I CTCTTC 1 cut(s) 182
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 175
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 142
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 141, 192
Csp6I GTAC 2 cut(s) 110, 118
CviAII CATG 1 cut(s) 121
CviJI RGCY 3 cut(s) 35, 115, 154
CviKI_1 RGCY 3 cut(s) 35, 115, 154
CviQI GTAC 2 cut(s) 110, 118
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 113
EagI CGGCCG 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EclXI CGGCCG 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 141, 192
Eco52I CGGCCG 1 cut(s) 113
EcoO109I RGGNCCY 2 cut(s) 141, 192
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 122, 161
FaqI GGGAC 1 cut(s) 154
FatI CATG 1 cut(s) 120
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 66
FspI TGCGCA 1 cut(s) 54
GlaI GCGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 154
HaeIII GGCC 1 cut(s) 115
HhaI GCGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 180, 186
HpyAV CCTTC 2 cut(s) 20, 100
HpyCH4III ACNGT 2 cut(s) 7, 137
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 53
KflI GGGWCCC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 164
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 66
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 1 cut(s) 199
MluCI AATT 3 cut(s) 29, 42, 167
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 94, 155, 183
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 3 cut(s) 142, 143, 194
NsbI TGCGCA 1 cut(s) 54
NspI RCATGY 1 cut(s) 124
PfeI GAWTC 1 cut(s) 181
PpuMI RGGWCCY 2 cut(s) 141, 192
Psp5II RGGWCCY 2 cut(s) 141, 192
PspFI CCCAGC 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 142, 143, 194
PspPI GGNCC 2 cut(s) 141, 192
PspPPI RGGWCCY 2 cut(s) 141, 192
RsaI GTAC 2 cut(s) 111, 119
RsaNI GTAC 2 cut(s) 110, 118
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 141, 192
SetI ASST 2 cut(s) 86, 111
SfaNI GCATC 1 cut(s) 40
SgeI CNNG 6 cut(s) 78, 89, 133, 163, 185, 207
SinI GGWCC 2 cut(s) 141, 192
Sse9I AATT 3 cut(s) 29, 42, 167
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 7, 137
TasI AATT 3 cut(s) 29, 42, 167
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 2 cut(s) 62, 142
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 2 cut(s) 62, 142
VpaK11BI GGWCC 2 cut(s) 141, 192
XapI RAATTY 1 cut(s) 42
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.