Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

25638987 .. 25639346

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCGACTCTCGTCGAAGCAAAGTACGGTGTCGAATCGGTCCGGACCTAGGCTTAGGAAGAAGCACAAGAGGCTTGATGCTATATGTGAGCAGGAGTATAAGAGGAACCATAATGGTGGGGTGGGACCCGGGCCGGGGAGATCGGGGAGTGGTGAGGTGGAGCTGCGTCGGAGCGGGAGGGCTCGCCGTGCCCCGATTTTGCTTGATGTCTCGCCTTCACCGCCGAAGAAGCGGCAGAAGGTTGATAAGAATGTAGTGGTGGATGCTGGGATGAGTGTGAAGGAGGAGGATTTGGAAACGCCGGGAAGTTGGAGATCGAGATTGATCGATCAAGGGGTAGAAATGTGGGTTTTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010570 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019898 GO:0031090 GO:0031312 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0031984 GO:0033043 GO:0033044 GO:0040008 GO:0040029 GO:0042175 GO:0042393 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045815 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070784 GO:0070786 GO:0080090 GO:0090033 GO:0098827 GO:1900428 GO:1900430 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2000217 GO:2000219 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA zf-HC5HC2H

Protein Analysis

120

Amino Acids

13.23

Weight (kDa)

10.54

Isoelectric Point (pI)

78.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	174
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	3 cut(s)	174, 221, 232
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	3 cut(s)	48, 134, 135
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	163
AspA2I	CCTAGG	1 cut(s)	47
AspS9I	GGNCC	4 cut(s)	39, 44, 125, 131
AsuC2I	CCSGG	4 cut(s)	129, 130, 135, 303
AsuHPI	GGTGA	2 cut(s)	164, 210
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	39, 44, 125
AvrII	CCTAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	171
BcnI	CCSGG	4 cut(s)	129, 130, 135, 303
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	164, 233
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	165, 234
Bme1390I	CCNGG	4 cut(s)	129, 130, 135, 303
Bme18I	GGWCC	3 cut(s)	39, 44, 125
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	4 cut(s)	39, 44, 125, 131
BmiI	GGNNCC	3 cut(s)	107, 126, 127
BmrFI	CCNGG	4 cut(s)	129, 130, 135, 303
BmsI	GCATC	2 cut(s)	67, 253
BoxI	GACNNNNGTC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	53
BpuMI	CCSGG	4 cut(s)	129, 130, 135, 303
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	47, 128, 134
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 134, 135
BseAI	TCCGGA	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	47, 128, 134
BseGI	GGATG	2 cut(s)	268, 276
BseLI	CCNNNNNNNGG	3 cut(s)	48, 134, 135
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	133
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	4 cut(s)	42, 129, 134, 302
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	48, 134, 135
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	184, 193
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	140, 314, 324, 328
BspACI	CCGC	3 cut(s)	174, 221, 232
BspANI	GGCC	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	3 cut(s)	107, 126, 127
BsrBI	CCGCTC	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	47, 128, 134
BssMI	GATC	4 cut(s)	140, 314, 324, 328
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	268, 276
BstKTI	GATC	4 cut(s)	143, 317, 327, 331
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	140, 314, 324, 328
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 188, 220, 229
BstPAI	GACNNNNGTC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	127, 128, 133, 301
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	133
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	268, 276
Cac8I	GCNNGC	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	39, 44, 125, 131
Cfr9I	CCCGGG	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	327
CpoI	CGGWCCG	1 cut(s)	39
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	24
CspI	CGGWCCG	1 cut(s)	39
CviJI	RGCY	5 cut(s)	52, 73, 133, 163, 182
CviKI_1	RGCY	5 cut(s)	52, 73, 133, 163, 182
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	4 cut(s)	142, 316, 326, 330
DpnII	GATC	4 cut(s)	140, 314, 324, 328
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	39, 44, 125
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	47
FaiI	YATR	4 cut(s)	83, 85, 99, 111
FaqI	GGGAC	1 cut(s)	138
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	164, 233
FokI	GGATG	2 cut(s)	275, 283
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	164, 233
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	2 cut(s)	164, 233
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	4 cut(s)	42, 129, 134, 302
HgaI	GACGC	1 cut(s)	155
HinfI	GANTC	2 cut(s)	6, 34
HpaII	CCGG	4 cut(s)	42, 129, 134, 302
HphI	GGTGA	2 cut(s)	164, 210
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	2 cut(s)	42, 318
Hpy99I	CGWCG	2 cut(s)	16, 171
HpyAV	CCTTC	3 cut(s)	225, 232, 274
HpyCH4III	ACNGT	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 188, 220, 229
HpyF3I	CTNAG	1 cut(s)	53
KflI	GGGWCCC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	140, 314, 324, 328
LmnI	GCTCC	2 cut(s)	160, 171
LpnPI	CCDG	6 cut(s)	55, 77, 142, 147, 252, 315
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	2 cut(s)	67, 253
MaeI	CTAG	1 cut(s)	48
MalI	GATC	4 cut(s)	142, 316, 326, 330
MbiI	CCGCTC	1 cut(s)	174
MboI	GATC	4 cut(s)	140, 314, 324, 328
MboII	GAAGA	2 cut(s)	70, 238
MhlI	GDGCHC	2 cut(s)	184, 193
MmeI	TCCRAC	2 cut(s)	149, 290
MnlI	CCTC	6 cut(s)	63, 96, 148, 171, 277, 280
MroI	TCCGGA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	4 cut(s)	42, 129, 134, 302
MspR9I	CCNGG	4 cut(s)	129, 130, 135, 303
MwoI	GCNNNNNNNGC	4 cut(s)	70, 188, 220, 229
NciI	CCSGG	4 cut(s)	129, 130, 135, 303
NdeII	GATC	4 cut(s)	140, 314, 324, 328
NlaIV	GGNNCC	3 cut(s)	107, 126, 127
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	165, 234
PpuMI	RGGWCCY	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	10
Psp5II	RGGWCCY	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	107, 126, 127
PspPI	GGNCC	4 cut(s)	39, 44, 125, 131
PspPPI	RGGWCCY	1 cut(s)	125
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	114
Rsr2I	CGGWCCG	1 cut(s)	39
RsrII	CGGWCCG	1 cut(s)	39
SatI	GCNGC	2 cut(s)	164, 233
Sau3AI	GATC	4 cut(s)	140, 314, 324, 328
Sau96I	GGNCC	4 cut(s)	39, 44, 125, 131
ScrFI	CCNGG	4 cut(s)	129, 130, 135, 303
SduI	GDGCHC	2 cut(s)	184, 193
SetI	ASST	4 cut(s)	49, 159, 165, 243
SfaNI	GCATC	2 cut(s)	67, 253
SinI	GGWCC	3 cut(s)	39, 44, 125
SmaI	CCCGGG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	114
SsiI	CCGC	3 cut(s)	174, 221, 232
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	127, 128, 133, 301
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	4 cut(s)	14, 32, 317, 327
TaqII	GACCGA	1 cut(s)	27
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	163
TspMI	CCCGGG	1 cut(s)	128
VpaK11BI	GGWCC	3 cut(s)	39, 44, 125
XmaI	CCCGGG	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	47
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.