pycom11g23780

protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
N/A
Physical Location & Seq
Forward (+)
26795291 .. 26796875
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGCTTTTTAAGAATATGTTATTAAAACACTGTGAAGTTGAGGAAAATCTTCCAAAACCCTATATAGATATATATATATATATATATATATATATATATATATATGGTGTCCATTTCCTTTCTTCCCTCCAGTTTTCAATCACATTAATTTCTAGAATGGCTTTGTGGTTTAGTTTCATGGTATCCTCTGTTTCTCTTCTATCTCAGCTAGTTATTATATTGCAACCTTGTAAAGTGCATGGTAATGGTGATGCAGGCGAAGATAAACAACTAAAGCAGTCAAATGGATGTGATTATTTTCGAGGAAGTTGGATAATTGATAGTTCATATCCATTTTACGATTCATCAAAGTGTCCATTATTCATCGATCGAGAATTCGATTGCCTGAAGAATGGTAGACCAGATAAAGAATACCTCAAATATAGATGGAAACCGGCCAGTGACTGGGACCTTCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

154

Amino Acids

18.08

Weight (kDa)

6.81

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 96 - 146 3e-21 PMR5 N terminal Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 444
AccI GTMKAC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 444
AoxI GGCC 1 cut(s) 435
ApoI RAATTY 1 cut(s) 374
AseI ATTAAT 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 448
BccI CCATC 1 cut(s) 420
BciVI GTATCC 1 cut(s) 193
BfaI CTAG 2 cut(s) 153, 209
BfuI GTATCC 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 449
BmrI ACTGGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 455
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 3 cut(s) 130, 438, 449
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 1 cut(s) 293
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 3 cut(s) 130, 438, 449
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 1 cut(s) 437
BshVI ATCGAT 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 370
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 444
BsnI GGCC 1 cut(s) 437
Bsp143I GATC 1 cut(s) 367
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 1 cut(s) 217
BspDI ATCGAT 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 3 cut(s) 130, 438, 449
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstMCI CGRYCG 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 366
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 437
BsuTUI ATCGAT 1 cut(s) 366
BtsCI GGATG 1 cut(s) 293
BtsIMutI CAGTG 2 cut(s) 28, 445
Cac8I GCNNGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 448
ClaI ATCGAT 1 cut(s) 366
CviAII CATG 2 cut(s) 178, 239
CviJI RGCY 3 cut(s) 161, 208, 437
CviKI_1 RGCY 3 cut(s) 161, 208, 437
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 455
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 2 cut(s) 181, 242
FatI CATG 2 cut(s) 177, 238
FblI GTMKAC 1 cut(s) 397
FokI GGATG 1 cut(s) 300
FspBI CTAG 2 cut(s) 153, 209
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 437
HapII CCGG 1 cut(s) 434
Hin1II CATG 2 cut(s) 181, 242
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 398
Hpy188III TCNNGA 2 cut(s) 153, 371
Hpy8I GTNNAC 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 223, 238, 254
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 2 cut(s) 181, 242
Kzo9I GATC 1 cut(s) 367
LpnPI CCDG 7 cut(s) 143, 240, 398, 414, 430, 447, 451
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 153, 209
MaeIII GTNAC 1 cut(s) 440
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 5 cut(s) 41, 114, 188, 272, 400
MluCI AATT 3 cut(s) 147, 315, 374
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 5 cut(s) 34, 137, 196, 296, 425
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 3 cut(s) 9, 23, 146
MslI CAYNNNNRTG 2 cut(s) 243, 349
MspI CCGG 1 cut(s) 434
NdeII GATC 1 cut(s) 367
NlaIII CATG 2 cut(s) 181, 242
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 1 cut(s) 440
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 444
Ple19I CGATCG 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 1 cut(s) 448
PspPPI RGGWCCY 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 444
PvuI CGATCG 1 cut(s) 370
RseI CAYNNNNRTG 2 cut(s) 243, 349
SaqAI TTAA 3 cut(s) 9, 23, 146
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 448
SetI ASST 5 cut(s) 210, 229, 417, 453, 461
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 243, 349
Sse9I AATT 3 cut(s) 147, 315, 374
SspMI CTAG 2 cut(s) 153, 209
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 301, 366, 370, 378
TasI AATT 3 cut(s) 147, 315, 374
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 9, 23, 146
Tru9I TTAA 3 cut(s) 9, 23, 146
TscAI CASTG 2 cut(s) 35, 445
TseFI GTSAC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 166, 315, 333, 352
TspRI CASTG 2 cut(s) 35, 445
Van91I CCANNNNNTGG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 448
VspI ATTAAT 1 cut(s) 146
XapI RAATTY 1 cut(s) 374
XbaI TCTAGA 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 153, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.